Escherichia coli LH85-a |
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Putative Escherichia coli LH85-a RM systems
Ref: Biggel,M. unpublished
REBASE ref # 31800
| Sequence length: | GenBank #: | |
| Chromosome: | 5,095,622 bp | CP100486 |
| plasmid pLH85-a-A: | 95,326 bp | CP100487 |
| plasmid pLH85-a-B: | 87,908 bp | CP100488 |
REBASE acronym: EcoLH85a
Org_num: 60140
All begin NLZ16_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3745 | transposase domain-containing protein | |||
| 3750 | M | M.SenSI170ORF3660P (100% identity) | AGGNNNNNRTTG | M.EcoLH85aORF3750P |
| 3755 | AAA family ATPase | |||
| 3760 | S | S2.SenSI170ORF3660P (100% identity) | AGGNNNNNRTTG | S.EcoLH85aORF3750P |
| 3765 | R | SenSI170ORF3660P (100% identity) | AGGNNNNNRTTG | EcoLH85aORF3750P |
| 3770 | IS3 family transposase | |||
| 4695 | IS5 family transposase | |||
| 4700 | M | M.Ecos81ORF3955P (58% identity) | M.EcoLH85aORF4700P | |
| 4705 | R | EcoLH85aORF21380P (100% identity) | EcoLH85aORF4700P | |
| 4710 | transposase | |||
| 20385 | DUF262 domain-containing HNH endonuclease family | |||
| 20390 | R | EcoZ151ORF20685P (100% identity) | CCANNNNNNNNNTTGG | EcoLH85aORF20395P |
| 20395 | M | M.SspS13ORF3945P (100% identity) | CCANNNNNNNNNTTGG | M.EcoLH85aORF20395P |
| 20400 | S | S.EcoZ151ORF20685P (100% identity) | CCANNNNNNNNNTTGG | S.EcoLH85aORF20395P |
| 20405 | endoribonuclease SymE | |||
| 20620 | DUF4942 domain-containing protein | |||
| 20625 | M | M.EcoZ151ORF20915P (100% identity) | M.EcoLH85aORF20625P | |
| 20630 | S | S.EcoZ151ORF20915P (52% identity) | S1.EcoLH85aORF20625P | |
| 20635 | S | S.EcoZ151ORF20915P (43% identity) | S2.EcoLH85aORF20625P | |
| 20640 | R | EcoZ151ORF20915P (100% identity) | EcoLH85aORF20625P | |
| 20650 | NADPH-dependent aldehyde reductase Ahr | |||
| 21370 | transposase | |||
| 21375 | R | EcoLH85aORF4700P (100% identity) | EcoLH85aORF21380P | |
| 21380 | M | M.Ecos81ORF3955P (58% identity) | M.EcoLH85aORF21380P | |
| 21385 | IS5 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2045 | cell division protein DamX | |||
| 2050 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoLH85aDamP |
| 2055 | ribulose-phosphate 3-epimerase | |||
| 2580 | DUF2556 family protein | |||
| 2585 | M | M.Sdy12039ORFBP (100% identity) | ATGCAT | M.EcoLH85aORF2585P |
| 2590 | DNA-binding transcriptional regulator Fis | |||
| 9875 | phosphohydrolase | |||
| 9880 | M | M.EcosE1DcmP (100% identity) | CCWGG | M.EcoLH85aDcmP |
| 9885 | V | V.EcosE1DcmP (74% identity) | V.EcoLH85aDcmP | |
| 9890 | drug/metabolite exporter YedA | |||
| 20600 | HNH endonuclease | |||
| 20605 | R | EcoZ151ORF20895P (100% identity) | EcoLH85aORF20605P | |
| 20610 | McrC family protein | |||
| plasmid pLH85-a-A | ||||
| 24510 | recombination-associated protein RdgC | |||
| 24515 | M | M.Eco1250ORF260P (99% identity) | M.EcoLH85aORF24515P | |
| 24530 | SPFH domain-containing protein | |||
| plasmid pLH85-a-B | ||||
| 25050 | 103 aa hypothetical protein | |||
| 25055 | M | M.StyR64ORFAP (100% identity) | M.EcoLH85aORF25055P | |
| 25060 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20605 | HNH endonuclease | |||
| 20610 | R | EcoZ151McrCP (100% identity) | EcoLH85aMcrCP | |
| 20615 | R | EcoZ151McrBP (100% identity) | EcoLH85aMcrBP | |
| 20620 | DUF4942 domain-containing protein | |||