Escherichia coli LH50-c |
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Putative Escherichia coli LH50-c RM systems
Ref: Biggel,M. unpublished
REBASE ref # 31800
| Sequence length: | GenBank #: | |
| Chromosome: | 5,559,392 bp | CP100500 |
| plasmid pLH50-c-B: | 112,293 bp | CP100502 |
| plasmid pLH50-c-C: | 64,795 bp | CP100503 |
REBASE acronym: EcoLH50c
Org_num: 60139
All begin NLZ13_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 23235 | restriction endonuclease | |||
| 23240 | M | M.EcoSCU316ORF2545P (100% identity) | M.EcoLH50cORF23240P | |
| 23245 | S | S.EcoSCU316ORF2545P (99% identity) | S.EcoLH50cORF23240P | |
| 23250 | R | EcoSCU316ORF2545P (100% identity) | EcoLH50cORF23240P | |
| 23255 | endoribonuclease SymE | |||
| plasmid pLH50-c-C | ||||
| 28505 | 3-phosphatase | |||
| 28510 | R | EcoR31ORF22360P (99% identity) | EcoLH50cORF28520P | |
| 28515 | S | S.AveWP2ORF10520P (79% identity) | S.EcoLH50cORF28520P | |
| 28520 | M | M.EcoR124II (99% identity) | M.EcoLH50cORF28520P | |
| 28525 | type II toxin-antitoxin system Phd/YefM family | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2095 | cell division protein DamX | |||
| 2100 | M | M.EcoSCU316DamP (100% identity) | GATC | M.EcoLH50cDamP |
| 2105 | ribulose-phosphate 3-epimerase | |||
| 2610 | DUF2556 family protein | |||
| 2615 | M | M.SdyFF51ORF20390P (100% identity) | ATGCAT | M.EcoLH50cORF2615P |
| 2620 | DNA-binding transcriptional regulator Fis | |||
| 4435 | 50 aa hypothetical protein | |||
| 4440 | R | Ecoc171ORF20410P (99% identity) | EcoLH50cORF4440P | |
| 4445 | HNH endonuclease | |||
| 5015 | 71 aa hypothetical protein | |||
| 5020 | M | M.EcoPK8275ORF4990P (100% identity) | M.EcoLH50cORF5020P | |
| 5025 | helix-turn-helix domain-containing protein | |||
| 5175 | integrase | |||
| 5180 | R | Eco56639ORF21720P (88% identity) | EcoLH50cORF5185P | |
| 5185 | M | M.Eco56639ORF21720P (99% identity) | M.EcoLH50cORF5185P | |
| 5190 | tyrosine-type recombinase/integrase | |||
| 11040 | phosphohydrolase | |||
| 11045 | M | M.SflLIN6DcmP (99% identity) | CCWGG | M.EcoLH50cDcmP |
| 11050 | V | V.SsoST152DcmP (100% identity) | CCWGG | V.EcoLH50cDcmP |
| 11055 | drug/metabolite exporter YedA | |||
| 19755 | LexA family transcriptional regulator | |||
| 19760 | M | M.EcoM718ORFFP (100% identity) | GATC | M.EcoLH50cORF19760P |
| 19765 | PerC family transcriptional regulator | |||
| 23455 | RM | Eco3157ORFDP (99% identity) | EcoLH50cORF23455P | |
| 23460 | DEAD/DEAH box helicase | |||
| 23490 | N-acetylneuraminic acid mutarotase | |||
| 23495 | R | EcoRG065ORF11765P (100% identity) | EcoLH50cORF23495P | |
| 23500 | peptidase | |||
| plasmid pLH50-c-B | ||||
| 28020 | 103 aa hypothetical protein | |||
| 28025 | M | M.StyR64ORFAP (100% identity) | M.EcoLH50cORF28025P | |
| 28030 | 73 aa hypothetical protein | |||
| plasmid pLH50-c-C | ||||
| 28760 | recombination-associated protein RdgC | |||
| 28765 | M | M.Eco5L08ORF20240P (80% identity) | M.EcoLH50cORF28765P | |
| 28770 | IS200/IS605 family transposase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 23230 | BrnT family toxin | |||
| 23235 | R | Ecou021MrrP (100% identity) | EcoLH50cMrrP | |
| 23240 | type I restriction-modification system subunit | |||