Planktothrix rubescens No.108 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Planktothrix rubescens No.108 RM systems
Ref: Blom,J. unpublished
REBASE ref # 11641
Complete sequence: 5,408,305 bp
GenBank #: LR882941
REBASE acronym: Pru108
Org_num: 60227
All begin NO108_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 438 | Glycolate oxidase subunit GlcD | |||
| 439 | S | M.Pag2AORF2503P (29% identity) | S.Pru108ORF440P | |
| 440 | M | M.Pru82ORF2754P (59% identity) | M.Pru108ORF440P | |
| 441 | Ferredoxin-dependent glutamate synthase 2 | |||
| 4699 | 204 aa hypothetical protein | |||
| 4700 | R | Pag758ORF3838P (97% identity) | Pru108ORF4713P | |
| 4701 | 137 aa hypothetical protein | |||
| 4702 | 85 aa hypothetical protein | |||
| 4703 | 71 aa hypothetical protein | |||
| 4704 | S | S.Pag1268ORF4132P (67% identity) | S.Pru108ORF4713P | |
| 4705 | 66 aa hypothetical protein | |||
| 4706 | 136 aa hypothetical protein | |||
| 4707 | 73 aa hypothetical protein | |||
| 4708 | UPF0331 protein | |||
| 4709 | protein MJ0435 | |||
| 4710 | Antitoxin | |||
| 4711 | YcfA family protein | |||
| 4712 | 78 aa hypothetical protein | |||
| 4713 | M | M.Pru82ORF3352P (100% identity) | M.Pru108ORF4713P | |
| 4714 | 490 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 87 | zinc protease SCO5738 | |||
| 88 | M | M.Pru82ORF3106P (100% identity) | M.Pru108ORF88P | |
| 89 | tRNA dimethylallyltransferase | |||
| 103 | 226 aa hypothetical protein | |||
| 104 | M | M.Pru82ORF3090P (100% identity) | M.Pru108ORF104P | |
| 105 | R | PagC7805ORF2647P (100% identity) | Pru108ORF104P | |
| 106 | Light-induced protein, chloroplastic | |||
| 146 | Arsenite methyltransferase | |||
| 147 | M | M.Pru7821ORF3121P (100% identity) | ATGCAT | M.Pru108ORF147P |
| 148 | R | Pru82ORF3047P (100% identity) | Pru108ORF147P | |
| 149 | 162 aa hypothetical protein | |||
| 160 | 395 aa hypothetical protein | |||
| 161 | RM | PagC7805ORF2607P (82% identity) | Pru108ORF161P | |
| 162 | 76 aa hypothetical protein | |||
| 332 | Dipeptide transport system permease protein | |||
| 333 | M | M.Pru7821ORF2924P (99% identity) | M.Pru108ORF333P | |
| 334 | protein HI_1419 | |||
| 368 | 74 aa hypothetical protein | |||
| 369 | M | M.Pru7821ORF2889P (100% identity) | M.Pru108ORF369P | |
| 370 | 58 aa hypothetical protein | |||
| 393 | protein SYNPCC7002_A0175 | |||
| 394 | M | M.Pru82ORF2798P (100% identity) | M.Pru108ORF394P | |
| 395 | Similar to tr/P73393/P73393 | |||
| 901 | 66 aa hypothetical protein | |||
| 902 | RM | Pru82ORF2321P (100% identity) | Pru108ORF902P | |
| 903 | Polyphosphate:ADP phosphotransferase | |||
| 1077 | 114 aa hypothetical protein | |||
| 1078 | M | M.Pru82ORF2145P (100% identity) | M.Pru108ORF1078P | |
| 1079 | 189 aa hypothetical protein | |||
| 1092 | 102 aa hypothetical protein | |||
| 1093 | RM | Pag204ORF18000P (88% identity) | Pru108ORF1093P | |
| 1094 | GTPase Der | |||
| 1136 | 155 aa hypothetical protein | |||
| 1137 | M | M.Pru82ORF2085P (100% identity) | M.Pru108ORF1137P | |
| 1138 | 3-oxoacyl-[acyl-carrier-protein] synthase 2 | |||
| 1142 | Photosystem II CP43 reaction center protein | |||
| 1143 | M | M.Pru82ORF2078P (100% identity) | M.Pru108ORF1143P | |
| 1144 | R | Pru82ORF2078AP (100% identity) | Pru108ORF1143AP | |
| 1145 | Tyrosine recombinase XerC | |||
| 1146 | 160 aa hypothetical protein | |||
| 1147 | 87 aa hypothetical protein | |||
| 1148 | Transposase for transposon Tn1546 | |||
| 1149 | R | Pru82ORF2078BP (100% identity) | Pru108ORF1143BP | |
| 1150 | protein Rv2102 | |||
| 1191 | 302 aa hypothetical protein | |||
| 1192 | M | M.Pru82ORF2026P (99% identity) | M.Pru108ORF1192P | |
| 1193 | R | Pru82ORF2026P (100% identity) | TCTAGA | Pru108ORF1192P |
| 1194 | phosphoenolpyruvate synthase | |||
| 1322 | 200 aa hypothetical protein | |||
| 1323 | M | M.Pru82ORF1893P (99% identity) | M.Pru108ORF1323P | |
| 1324 | Ribosomal protein S12 methylthiotransferase | |||
| 1704 | Adenylate cyclase 1 | |||
| 1705 | RM | Pga1313ORF15125P (79% identity) | Pru108ORF1705P | |
| 1706 | 76 aa hypothetical protein | |||
| 1757 | Deoxyribose-phosphate aldolase | |||
| 1758 | R | Pru82ORF1446P (100% identity) | Pru108ORF1759P | |
| 1759 | M | M.Pru7821ORF1499P (99% identity) | M.Pru108ORF1759P | |
| 1760 | Dihydroorotase | |||
| 1821 | protein aq_1220 | |||
| 1823 | M | M.Pru82ORF1381P (99% identity) | M.Pru108ORF1823P | |
| 1824 | 241 aa hypothetical protein | |||
| 1901 | CupB | |||
| 1902 | RM | Pag204ORF24710P (90% identity) | Pru108ORF1902P | |
| 1903 | Inorganic triphosphatase | |||
| 2004 | 29 aa hypothetical protein | |||
| 2005 | RM | Pag758ORF3132P (82% identity) | Pru108ORF2005P | |
| 2006 | 743 aa hypothetical protein | |||
| 2191 | Restriction endonuclease EcoRI | |||
| 2192 | M | M.Pru7821ORF1050P (98% identity) | M.Pru108ORF2192P | |
| 2193 | 220 aa hypothetical protein | |||
| 2286 | GxxExxY protein | |||
| 2287 | RM | Pru82ORF901P (95% identity) | Pru108ORF2287P | |
| 2288 | Anthranilate phosphoribosyltransferase | |||
| 2312 | 55 aa hypothetical protein | |||
| 2313 | M | M.Pru82ORF878P (100% identity) | M.Pru108ORF2313P | |
| 2314 | R | Pru82ORF878P (100% identity) | Pru108ORF2313P | |
| 2315 | 811 aa hypothetical protein | |||
| 2749 | 80 aa hypothetical protein | |||
| 2750 | RM | Ocy1ORF25000P (64% identity) | Pru108ORF2750P | |
| 2751 | PIN domain protein like protein | |||
| 2834 | transposase in snaA-snaB intergenic | |||
| 2835 | M | M.Pru7821ORF408P (100% identity) | M.Pru108ORF2835P | |
| 2836 | 122 aa hypothetical protein | |||
| 2865 | Cold shock-like protein CspC | |||
| 2866 | M | M.Pru7821ORF373P (99% identity) | M.Pru108ORF2866P | |
| 2867 | Modification methylase RsrI | |||
| 2866 | Modification methylase HincII | |||
| 2867 | M | M.Pru82ORF326P (99% identity) | M.Pru108ORF2867P | |
| 2868 | 205 aa hypothetical protein | |||
| 3038 | MEKHLA domain protein | |||
| 3039 | RM | Pru7821ORF204P (98% identity) | Pru108ORF3039P | |
| 3040 | Na(+)/H(+) antiporter NhaS2 | |||
| 3049 | Adenosylhomocysteinase | |||
| 3050 | M | M.Pru82ORF142P (100% identity) | M.Pru108ORF3050P | |
| 3051 | 72 aa hypothetical protein | |||
| 3388 | Transcriptional regulator, TetR family | |||
| 3389 | R | RanXG19ORF3100P (90% identity) | Pru108ORF3390P | |
| 3390 | M | M.RanXG19ORF3100P (83% identity) | M.Pru108ORF3390P | |
| 3391 | 96 aa hypothetical protein | |||
| 3402 | 175 aa hypothetical protein | |||
| 3403 | M | M.Pru82DndEP (100% identity) | M.Pru108DndEP | |
| 3404 | 661 aa hypothetical protein | |||
| 3403 | 133 aa hypothetical protein | |||
| 3404 | M | M.Pru82DndDP (99% identity) | M.Pru108DndDP | |
| 3405 | 525 aa hypothetical protein | |||
| 3404 | 661 aa hypothetical protein | |||
| 3405 | M | M.Pag1268DndCP (83% identity) | M.Pru108DndCP | |
| 3406 | Genome sequencing data, contig C323 (Modular | |||
| 3659 | Phosphoenolpyruvate synthase | |||
| 3660 | M | M.Pru82ORF4402P (100% identity) | M.Pru108ORF3660P | |
| 3661 | R | Pru82ORF4402P (100% identity) | Pru108ORF3660P | |
| 3662 | BamHI control element | |||
| 3723 | Photosystem I P700 chlorophyll a apoprotein A2 | |||
| 3724 | R | Pag365ORF4141P (98% identity) | Pru108ORF3725P | |
| 3725 | M | M.Pag7811ORF4197P (98% identity) | M.Pru108ORF3725P | |
| 3726 | Sensor histidine kinase WalK | |||
| 3764 | WD repeat-containing protein alr2800 | |||
| 3765 | M | M.Pru82ORF4293P (100% identity) | M.Pru108ORF3765P | |
| 3766 | Antitoxin | |||
| 3904 | Type I restriction enzyme R protein N terminal | |||
| 3905 | RM | Pru7821ORF4240P (90% identity) | Pru108ORF3905P | |
| 3906 | 125 aa hypothetical protein | |||
| 3923 | Energy-coupling factor transporter ATP-binding | |||
| 3924 | M | M.Pru82ORF4129P (99% identity) | M.Pru108ORF3924P | |
| 3925 | Ribosome-binding ATPase YchF | |||
| 3943 | Phycobiliprotein ApcE | |||
| 3944 | RM | Pru82ORF4112P (98% identity) | Pru108ORF3944P | |
| 3945 | 562 aa hypothetical protein | |||
| 4001 | DNA polymerase III subunit alpha | |||
| 4002 | M | M.Pru82ORF4055P (44% identity) | M.Pru108ORF4002AP | |
| ??? | M | M.Pru82ORF4055P (44% identity) | M.Pru108ORF4002BP | |
| 4003 | 205 aa hypothetical protein | |||
| 4502 | Linearmycin resistance ATP-binding protein LnrL | |||
| ??? | M | M.Pru7821ORF3634P (100% identity) | M.Pru108ORF4503P | |
| 4505 | R | Pru82ORF3555P (100% identity) | Pru108ORF4503P | |
| 4506 | 159 aa hypothetical protein | |||
| 4545 | ABC transporter ATP-binding protein | |||
| 4546 | M | M.Pru82ORF3513P (100% identity) | M.Pru108ORF4546P | |
| 4547 | 293 aa hypothetical protein | |||
| 4610 | 123 aa hypothetical protein | |||
| 4611 | M | M.Pru7821ORF3524P (99% identity) | M.Pru108ORF4611P | |
| 4612 | Phosphoribosylamine--glycine ligase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 995 | 121 aa hypothetical protein | |||
| ??? | M | M.Pru82ORF2226P (98% identity) | M.Pru108ORF997P | |
| 1000 | 43 aa hypothetical protein | |||
| 1001 | 202 aa hypothetical protein | |||
| 1002 | R | Pru82ORF2226P (99% identity) | Pru108ORF997P | |
| 1003 | Ferredoxin | |||
| 1716 | Plasmid stabilization system | |||
| 1717 | R | CbaC216ORF1712P (87% identity) | Pru108ORF1718P | |
| 1718 | M | M.CarVM7ORF1755P (83% identity) | M.Pru108ORF1718P | |
| 1719 | Toxin HigB-1 | |||
| 2797 | 230 aa hypothetical protein | |||
| 2798 | R | Pru7821ORF442P (98% identity) | Pru108ORF2799P | |
| 2799 | M | M.Pru7821ORF442P (100% identity) | M.Pru108ORF2799P | |
| 2800 | Ycf54-like protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 514 | transcription regulator with HTH | |||
| 515 | R | Pru7821McrCP (95% identity) | Pru108McrCP | |
| 516 | R | Pag66McrBP (88% identity) | Pru108McrBP | |
| 517 | 213 aa hypothetical protein | |||
| 3210 | SMC protein-like | |||
| 3211 | R | PagC7805MrrP (100% identity) | Pru108MrrP | |
| 3212 | 306 aa hypothetical protein | |||
| 3671 | Similarity | |||
| 3672 | R | Pru82GmrSDP (98% identity) | Pru108GmrSDP | |
| 3673 | Genome sequencing data, contig C299 | |||