Planktothrix agardhii No.2A |
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Putative Planktothrix agardhii No.2A RM systems
Ref: Blom,J. unpublished
REBASE ref # 11641
| Sequence length: | GenBank #: | |
| chromosome 1: | 4,724,555 bp | LR882938 |
| plasmid p2: | 62,266 bp | LR882940 |
REBASE acronym: Pag2A
Org_num: 60218
All begin NO2A_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 1001 | 486 aa hypothetical protein | |||
| 1002 | M | M.Pag204ORF8260P (100% identity) | M.Pag2AORF1002P | |
| 1003 | Antitoxin | |||
| 1004 | protein MJ0435 | |||
| 1005 | 73 aa hypothetical protein | |||
| 1006 | 136 aa hypothetical protein | |||
| 1007 | 66 aa hypothetical protein | |||
| 1008 | S | S.Pag365ORF734P (57% identity) | S.Pag2AORF1002P | |
| 1009 | 71 aa hypothetical protein | |||
| 1010 | 85 aa hypothetical protein | |||
| 1011 | 137 aa hypothetical protein | |||
| 1012 | R | Pag66ORF326P (99% identity) | Pag2AORF1002P | |
| 1013 | 204 aa hypothetical protein | |||
| 1513 | 1-deoxy-D-xylulose-5-phosphate synthase | |||
| 1514 | M | M.Pag7811ORF1264P (100% identity) | M.Pag2AORF1514P | |
| 1515 | Genome sequencing data, contig C328 | |||
| 1516 | protein HI_1395 | |||
| 1517 | S | S.Pag365ORF2552P (93% identity) | S.Pag2AORF1514P | |
| 1518 | Type I site-specific deoxyribonuclease | |||
| 2502 | Ferredoxin-dependent glutamate synthase 2 | |||
| 2503 | M | M.MaeKWORF5600P (60% identity) | M.Pag2AORF2503P | |
| 2504 | 97 aa hypothetical protein | |||
| 2628 | Glutamine-dependent NAD(+) synthetase | |||
| 2629 | R | Pag66ORF4464P (95% identity) | Pag2AORF2631P | |
| 2630 | S | S.Afe6S08ORF13725P (35% identity) | S.Pag2AORF2631P | |
| 2631 | M | M.Pag66ORF4464P (94% identity) | M.Pag2AORF2631P | |
| 2632 | protein slr0436 | |||
| 4101 | 198 aa hypothetical protein | |||
| 4102 | M | M.Pag7811ORF3893P (85% identity) | M.Pag2AORF4102P | |
| 4103 | 89 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 113 | Photosystem I P700 chlorophyll a apoprotein A2 | |||
| 114 | R | Pag7811ORF4197P (100% identity) | Pag2AORF115P | |
| 115 | M | M.Pag7811ORF4197P (100% identity) | M.Pag2AORF115P | |
| 116 | Sensor protein kinase WalK | |||
| 151 | WD repeat-containing protein alr2800 | |||
| 152 | M | M.Pag365ORF4179P (34% identity) | M.Pag2AORF152AP | |
| 153 | Transposase | |||
| ??? | M | M.Pag66ORF3815P (51% identity) | M.Pag2AORF152BP | |
| 155 | Antitoxin | |||
| 201 | 133 aa hypothetical protein | |||
| 202 | C | C.PagC7805ORF3889P (100% identity) | C.Pag2AORF204P | |
| 203 | R | PagC7805ORF3889P (100% identity) | Pag2AORF204P | |
| 204 | M | M.PagC7805ORF3889P (100% identity) | M.Pag2AORF204P | |
| 205 | Ribonuclease J | |||
| 286 | 562 aa hypothetical protein | |||
| 287 | RM | Pag365ORF51P (99% identity) | Pag2AORF287P | |
| 288 | Phycobiliprotein ApcE | |||
| 301 | Ribosome-binding ATPase YchF | |||
| 302 | M | M.Pag204ORF1580P (94% identity) | M.Pag2AORF302P | |
| 303 | R | Pag204ORF1580P (100% identity) | Pag2AORF302P | |
| 304 | Energy-coupling factor transporter ATP-binding | |||
| 356 | Diaminopimelate decarboxylase | |||
| 357 | M | M.Pag7811ORF82P (100% identity) | M.Pag2AORF357P | |
| 358 | 31 aa hypothetical protein | |||
| 372 | DNA polymerase III subunit alpha | |||
| 373 | M | M.Pag976ORF3278P (100% identity) | M.Pag2AORF373P | |
| 374 | R | Pag7811ORF98P (99% identity) | Pag2AORF373P | |
| 375 | D-alanyl-D-alanine carboxypeptidase DacB | |||
| 682 | Transposase | |||
| 683 | M | M.PagC7805ORF17P (22% identity) | M.Pag2AORF683P | |
| 684 | 69 aa hypothetical protein | |||
| 830 | Linearmycin resistance ATP-binding protein LnrL | |||
| 831 | M | M.Pag7811ORF569P (100% identity) | M.Pag2AORF831P | |
| 832 | 159 aa hypothetical protein | |||
| 875 | ABC transporter ATP-binding protein | |||
| 876 | M | M.PagC7805ORF200P (100% identity) | CAGCTG | M.Pag2AORF876P |
| 877 | 293 aa hypothetical protein | |||
| 1087 | Type-2 restriction enzyme BsuBI | |||
| 1088 | M | M.Pag66ORF410P (100% identity) | M.Pag2AORF1088P | |
| 1089 | 123 aa hypothetical protein | |||
| 1312 | 241 aa hypothetical protein | |||
| 1313 | R | Pag7811ORF1055P (100% identity) | Pag2AORF1314P | |
| 1314 | M | M.Pag7811ORF1055P (100% identity) | M.Pag2AORF1314P | |
| 1316 | Undecaprenyl | |||
| 1374 | Dihydroorotase | |||
| 1375 | M | M.Pag1268ORF171P (100% identity) | M.Pag2AORF1375P | |
| 1376 | Deoxyribose-phosphate aldolase | |||
| 1423 | 40 aa hypothetical protein | |||
| 1424 | RM | PagC7805ORF2306P (97% identity) | Pag2AORF1424P | |
| 1425 | Adenylate cyclase 1 | |||
| 1608 | Peptidase C14, caspase catalytic subunit p20 | |||
| 1609 | M | M.Pru7821ORF1769P (100% identity) | M.Pag2AORF1609P | |
| 1610 | 51,5 kDa protein | |||
| 1610 | 51,5 kDa protein | |||
| 1611 | M | M.Pag66ORF934P (97% identity) | M.Pag2AORF1611P | |
| 1612 | 156 aa hypothetical protein | |||
| 1818 | tRNA modification GTPase MnmE | |||
| 1819 | M | M.PagC7805ORF1879P (100% identity) | GGATCC | M.Pag2AORF1819P |
| 1820 | tRNA uridine 5-carboxymethylaminomethyl | |||
| 1870 | phosphoenolpyruvate synthase | |||
| 1871 | R | Pag204ORF17070P (100% identity) | Pag2AORF1872P | |
| 1872 | M | M.Pag7811ORF1632P (99% identity) | M.Pag2AORF1872P | |
| 1873 | 95 aa hypothetical protein | |||
| 1917 | 3-oxoacyl-[acyl-carrier-protein] synthase 2 | |||
| 1918 | M | M.Pag7811ORF1679P (100% identity) | M.Pag2AORF1918P | |
| 1919 | 155 aa hypothetical protein | |||
| 1965 | GTPase Der | |||
| 1966 | RM | Pag66ORF1280P (99% identity) | Pag2AORF1966P | |
| 1967 | 102 aa hypothetical protein | |||
| 1982 | 189 aa hypothetical protein | |||
| 1983 | M | M.Pag1268ORF773P (99% identity) | M.Pag2AORF1983P | |
| 1984 | 56 aa hypothetical protein | |||
| 2131 | 97 aa hypothetical protein | |||
| 2132 | RM | Pag204ORF19630P (99% identity) | Pag2AORF2132P | |
| 2133 | 66 aa hypothetical protein | |||
| 2229 | Ycf55-like protein | |||
| 2230 | M | M.Pag204ORF20610P (100% identity) | M.Pag2AORF2230P | |
| 2231 | R | Pag204ORF20610P (99% identity) | Pag2AORF2230P | |
| 2232 | 103 aa hypothetical protein | |||
| 2238 | 74 aa hypothetical protein | |||
| 2239 | RM | Pag204ORF20700P (98% identity) | Pag2AORF2239P | |
| 2240 | 116 aa hypothetical protein | |||
| 2540 | 430 aa hypothetical protein | |||
| 2541 | R | Pag66ORF1864P (100% identity) | Pag2AORF2542P | |
| 2542 | M | M.Pag204ORF23740P (100% identity) | M.Pag2AORF2542P | |
| 2543 | protein SYNPCC7002_A0175 | |||
| 2564 | 55 aa hypothetical protein | |||
| 2565 | M | M.Pag66ORF1887P (100% identity) | M.Pag2AORF2565P | |
| 2566 | 91 aa hypothetical protein | |||
| 2594 | Phytoene dehydrogenase | |||
| 2595 | M | M.Pag66ORF1917P (100% identity) | M.Pag2AORF2595P | |
| 2596 | Dipeptide transport system permease protein | |||
| 2640 | CO2 hydration protein | |||
| 2641 | RM | Pag7811ORF2430P (97% identity) | Pag2AORF2641P | |
| 2642 | tRNA(fMet)-specific endonuclease VapC | |||
| 2724 | 29 aa hypothetical protein | |||
| 2725 | RM | Pag204ORF25600P (99% identity) | Pag2AORF2725P | |
| 2726 | 743 aa hypothetical protein | |||
| 2803 | 247 aa hypothetical protein | |||
| 2804 | R | Pag976ORF1392P (100% identity) | Pag2AORF2805P | |
| 2805 | M | M.Pag976ORF1392P (99% identity) | M.Pag2AORF2805P | |
| 2806 | Cysteine desulfurase IscS | |||
| 2947 | Sulfite reductase [ferredoxin] | |||
| 2948 | RM | Pag204ORF27820P (99% identity) | Pag2AORF2948P | |
| 2949 | Anthranilate phosphoribosyltransferase | |||
| 3034 | Ribonuclease D | |||
| 3035 | M | M.PagC7805ORF630P (100% identity) | AGATCT | M.Pag2AORF3035P |
| 3037 | 304 aa hypothetical protein | |||
| 3194 | Prevent-host-death family protein | |||
| 3195 | RM | Pag66ORF2512P (99% identity) | Pag2AORF3195P | |
| 3196 | 395 aa hypothetical protein | |||
| 3203 | NAD(P) transhydrogenase subunit alpha part 1 | |||
| 3204 | R | Pag66ORF2521P (100% identity) | Pag2AORF3205P | |
| 3205 | M | M.Pag66ORF2521P (100% identity) | ATGCAT | M.Pag2AORF3205P |
| 3206 | Methyltransferase type 11 | |||
| 3232 | Light-induced protein, chloroplastic | |||
| 3233 | R | Pru108ORF104P (100% identity) | Pag2AORF3234P | |
| 3234 | M | M.Pag204ORF30800P (55% identity) | M.Pag2AORF3234BP | |
| 3235 | M | M.Pru82ORF3090P (39% identity) | M.Pag2AORF3234AP | |
| 3236 | 226 aa hypothetical protein | |||
| 3432 | ATP-dependent Clp protease adapter protein ClpS | |||
| ??? | M | M.Pag7811ORF3227P (95% identity) | M.Pag2AORF3433P | |
| 3435 | R | Pte9214ORF4246P (96% identity) | Pag2AORF3433P | |
| 3436 | C | C.Pag204ORF32880P (97% identity) | C.Pag2AORF3433P | |
| 3437 | WD repeat-containing protein alr2800 | |||
| 3448 | Lipid-A-disaccharide synthase | |||
| 3449 | M | M.Pag976ORF2046P (100% identity) | M.Pag2AORF3449P | |
| 3450 | R | Pag976ORF2046P (100% identity) | Pag2AORF3449P | |
| ??? | C | C.Pag976ORF2046P (100% identity) | C.Pag2AORF3449P | |
| 3451 | 78 aa hypothetical protein | |||
| 3532 | PKHD-type hydroxylase tll1907 | |||
| 3533 | RM | PagC7805ORF2940P (97% identity) | Pag2AORF3533P | |
| 3534 | 53 aa hypothetical protein | |||
| 3795 | 72 aa hypothetical protein | |||
| 3796 | M | M.Pag7811ORF3595P (99% identity) | M.Pag2AORF3796P | |
| 3797 | Adenosylhomocysteinase | |||
| 3807 | Na(+)/H(+) antiporter NhaS2 | |||
| 3808 | RM | Pag1268ORF2631P (99% identity) | Pag2AORF3808P | |
| 3809 | 154 aa hypothetical protein | |||
| 4114 | 520 aa hypothetical protein | |||
| 4115 | R | PagC7805ORF3503P (96% identity) | Pag2AORF4115P | |
| 4116 | 525 aa hypothetical protein | |||
| 4115 | HNH endonuclease | |||
| 4116 | M | M.Pag7811DndCP (100% identity) | M.Pag2ADndCP | |
| 4117 | 661 aa hypothetical protein | |||
| 4116 | 525 aa hypothetical protein | |||
| 4117 | M | M.Pag7811DndDP (100% identity) | M.Pag2ADndDP | |
| 4118 | DNA sulfur modification protein DndE | |||
| 4117 | 661 aa hypothetical protein | |||
| 4118 | M | M.PagC7805DndEP (100% identity) | M.Pag2ADndEP | |
| 4119 | 175 aa hypothetical protein | |||
| plasmid p2 | ||||
| 4329 | RNA polymerase-associated protein RapA | |||
| 4330 | RM | Pag66ORF4394P (97% identity) | Pag2AORF4330P | |
| 4331 | 253 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 2063 | 201 aa hypothetical protein | |||
| 2064 | M | M.Pag204ORF18990P (100% identity) | M.Pag2AORF2064P | |
| 2066 | 121 aa hypothetical protein | |||
| 3579 | 230 aa hypothetical protein | |||
| 3580 | R | Pag365ORF3335P (97% identity) | Pag2AORF3581P | |
| 3581 | M | M.PagC7805ORF2983P (100% identity) | M.Pag2AORF3581P | |
| 3582 | Ycf54-like protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 2446 | 213 aa hypothetical protein | |||
| 2447 | R | Pag7811McrBP (56% identity) | Pag2AMcrBP | |
| 2448 | R | Pag7811McrCP (96% identity) | Pag2AMcrCP | |
| 2449 | transcription regulator with HTH | |||