Escherichia coli isolate 68 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli isolate 68 RM systems
Ref: Alioto,T. et al. unpublished
REBASE ref # 33419
| Sequence length: | GenBank #: | |
| chromosome main: | 5,290,358 bp | OX030728 |
| plasmid P1: | 115,409 bp | OX030729 |
| plasmid P2: | 100,782 bp | OX030730 |
| plasmid P3: | 100,287 bp | OX030731 |
REBASE acronym: Ecoi68
Org_num: 59856
All begin AI2959V1_, AI2959V1_REPA
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome main | ||||
| 3521 | DNA-binding proteinA | |||
| 3522 | M | M.Pre393ORF2750P (100% identity) | M.Ecoi68ORF3522P | |
| 3523 | S | S.EcotcmA3ORF16550P (100% identity) | S.Ecoi68ORF3522P | |
| 3524 | ATP-dependent DNA helicase RecQ | |||
| 3525 | DNA processing protein DprA | |||
| 3526 | R | EcotcmA3ORF16550P (100% identity) | Ecoi68ORF3522P | |
| 8 | pseudogene | |||
| 3735 | 529 aa hypothetical protein | |||
| 3736 | S | S.EcoDEC13CORF1048P (99% identity) | GGANNNNNNCTTT | S.Ecoi68ORF3737P |
| 3737 | M | M.EcoFu014ORF1555P (100% identity) | GGANNNNNNCTTT | M.Ecoi68ORF3737P |
| 3738 | R | EcoEC0190ORF2800P (100% identity) | GGANNNNNNCTTT | Ecoi68ORF3737P |
| 3739 | 77 aa hypothetical protein | |||
| plasmid P1 | ||||
| 312 | IS1 ORF2 | |||
| 4982 | R | KpnKPH1ORF27575P (100% identity) | CAAYNNNNNCTGG | Ecoi68ORF4984P |
| 4983 | S | S.KpnKPH1ORF27575P (100% identity) | CAAYNNNNNCTGG | S.Ecoi68ORF4984P |
| 4984 | M | M.KpnKPA1ORF26345P (100% identity) | CAAYNNNNNCTGG | M.Ecoi68ORF4984P |
| 4985 | 73 aa hypothetical protein | |||
| plasmid P3 | ||||
| 5143 | DNA-binding proteinA | |||
| 5144 | M | M.Pre393ORF2750P (100% identity) | M.Ecoi68ORF5144P | |
| 5145 | S | S.EcotcmA3ORF16550P (100% identity) | S.Ecoi68ORF5144P | |
| 5146 | ATP-dependent DNA helicase RecQ | |||
| 5147 | DNA processing protein DprA | |||
| 5148 | R | EcotcmA3ORF16550P (100% identity) | Ecoi68ORF5144P | |
| 341 | pseudogene | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome main | ||||
| 1208 | inner membrane transporter YedA | |||
| 1209 | V | V.Ecos142DcmP (100% identity) | V.Ecoi68DcmP | |
| 1210 | M | M.Ecos142DcmP (100% identity) | CCWGG | M.Ecoi68DcmP |
| 1211 | 231 aa hypothetical protein | |||
| 1815 | 355 aa hypothetical protein | |||
| 1816 | M | M.Eal302ORF6155P (99% identity) | M.Ecoi68ORF1816P | |
| 1817 | 64 aa hypothetical protein | |||
| 2691 | Prophage integrase IntA | |||
| 2692 | M | M.EcoR46ORF14645P (100% identity) | ATGCAT | M.Ecoi68ORF2692P |
| 2693 | 59 aa hypothetical protein | |||
| 2791 | Ribulose-phosphate 3-epimerase | |||
| 2792 | M | M.SspPIBDamP (100% identity) | GATC | M.Ecoi68DamP |
| 2793 | Cell division protein DamX | |||
| 3780 | 1204 aa hypothetical protein | |||
| 3781 | RM | EcoEC0190ORF3005P (100% identity) | Ecoi68ORF3781P | |
| 3782 | DNA replication and repair protein RecF | |||
| plasmid P1 | ||||
| 4960 | 73 aa hypothetical protein | |||
| 4961 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Ecoi68ORF4961P |
| 4962 | 308 aa hypothetical protein | |||
| plasmid P2 | ||||
| 5013 | 308 aa hypothetical protein | |||
| 5014 | M | M.Sso866ORF27155P (100% identity) | M.Ecoi68ORF5014P | |
| 5015 | 73 aa hypothetical protein | |||
| plasmid P3 | ||||
| 5122 | 308 aa hypothetical protein | |||
| 5123 | M | M.Sfl7ORF23565P (100% identity) | M.Ecoi68ORF5123P | |
| 5124 | 73 aa hypothetical protein | |||