Escherichia coli EC2648-R1 |
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Putative Escherichia coli EC2648-R1 RM systems
Ref: Qu,H. and Ou,H.-Y. unpublished
REBASE ref # 21278
Complete sequence: 4,600,205 bp
GenBank #: CP084205
REBASE acronym: Eco2648R1
Org_num: 59584
All begin LDB14_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 19020 | adenine/cytosine-specific restriction | |||
| 19025 | R | Msa17ORFC2P (98% identity) | AACNNNNNNGTGC | Eco2648R1ORF19030P |
| 19030 | M | M.SenHNK130ORF17125P (100% identity) | AACNNNNNNGTGC | M.Eco2648R1ORF19030P |
| 19035 | S | S.EcoVir2ORF19035P (100% identity) | AACNNNNNNGTGC | S.Eco2648R1ORF19030P |
| 19040 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1660 | cell division protein DamX | |||
| 1665 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco2648R1DamP |
| 1670 | ribulose-phosphate 3-epimerase | |||
| 2290 | DUF2556 family protein | |||
| 2295 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.Eco2648R1ORF2295P |
| 2300 | DNA-binding transcriptional regulator Fis | |||
| 8785 | phosphohydrolase | |||
| 8790 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco2648R1DcmP |
| 8795 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.Eco2648R1DcmP |
| 8800 | drug/metabolite exporter YedA | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 12990 | NADP-dependent isocitrate dehydrogenase | |||
| 12995 | R | SsoSE61ORF22640P (100% identity) | YCGR | Eco2648R1ORF12995P |
| 13000 | site-specific DNA recombinase | |||
| 19015 | GTPase | |||
| 19020 | R | SenHNK130MrrP (100% identity) | Eco2648R1MrrP | |
| 19025 | type I restriction-modification system | |||
| 19040 | endoribonuclease SymE | |||
| 19045 | R | EcoVir2McrBP (100% identity) | Eco2648R1McrBP | |
| 19050 | R | SenHNK130McrCP (100% identity) | Eco2648R1McrCP | |
| 19055 | 978 aa hypothetical protein | |||