Neisseria gonorrhoeae 2312 |
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Putative Neisseria gonorrhoeae 2312 RM systems
Ref: Gomez,O.M. et al. unpublished
REBASE ref # 34642
Complete sequence: 2,210,720 bp
GenBank #: CP097461
REBASE acronym: Ngo2312
Org_num: 59341
All begin M3J58_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2340 | ADP-glyceromanno-heptose 6-epimerase | |||
| 2345 | M | M.NgoWSII (100% identity) | GCANNNNNNNGTC | M.Ngo2312ORF2345P |
| 2350 | DNA damage-inducible protein D | |||
| 2355 | S | S.NgoTFGB2ORFAP (100% identity) | GCANNNNNNNGTC | S.Ngo2312ORF2345P |
| 2360 | R | NgoWNIIP (100% identity) | GCANNNNNNNGTC | Ngo2312ORF2345P |
| 2365 | ATP-dependent Clp protease ATP-binding subunit | |||
| 3700 | replication-associated recombination protein A | |||
| 3705 | R | NgoJH13ORFKP (99% identity) | GAGNNNNNTAC | Ngo2312ORF3730P |
| 3710 | hydroxyacid dehydrogenase | |||
| 3715 | S | S.NgoSW0274ORF3585P (100% identity) | GAGNNNNNTAC | S.Ngo2312ORF3730P |
| 3720 | 186 aa hypothetical protein | |||
| 3725 | 280 aa hypothetical protein | |||
| 3730 | M | M.NgoJH14ORFMP (100% identity) | GAGNNNNNTAC | M.Ngo2312ORF3730P |
| 3735 | ABC transporter | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 30 | leucine--tRNA ligase | |||
| 35 | R | Ngos1291ORF5750P (100% identity) | GATC | Ngo2312ORF40P |
| ??? | M | M.NgoWSORF8P (100% identity) | GATC | M.Ngo2312ORF40P |
| 45 | 184 aa hypothetical protein | |||
| 1810 | phenylalanine--tRNA ligase subunit alpha | |||
| 1815 | V | V.NgoWSORF391P (100% identity) | V.Ngo2312ORF1820P | |
| ??? | M | M.NgoWSORF391P (100% identity) | CCGG | M.Ngo2312ORF1820P |
| 1830 | R | NgoJH13ORFRP (100% identity) | CCGG | Ngo2312ORF1820P |
| 1835 | phenylalanine--tRNA ligase subunit beta | |||
| 2110 | N-6 DNA methylase | |||
| 2115 | S | S.NgoWSORF450P (100% identity) | GACNNNNNTGA | S.Ngo2312ORF2115P |
| 2120 | 140 aa hypothetical protein | |||
| 2140 | uroporphyrinogen decarboxylase | |||
| 2145 | H | H.Ngos1291ORF7560P (100% identity) | H.Ngo2312ORF2155P | |
| 2150 | R | NgoWLORF388P (100% identity) | GCSGC | Ngo2312ORF2155P |
| 2155 | M | M.NgoSW0032ORF1880P (99% identity) | GCSGC | M.Ngo2312ORF2155P |
| 2160 | DNA repair protein RadA | |||
| 3595 | 3-isopropylmalate dehydrogenase | |||
| 3600 | R | NgoWSORF784P (100% identity) | GGNNCC | Ngo2312ORF3605P |
| 3605 | M | M.NmeMBW2ORFJP (100% identity) | GGNNCC | M.Ngo2312ORF3605P |
| 3610 | 3-isopropylmalate dehydratase small subunit | |||
| 4875 | anthranilate synthase component I | |||
| 4880 | M | M.NgoWLORF1156P (100% identity) | GCCGGC | M.Ngo2312ORF4880P |
| 4885 | R | Ngos1291ORF10080P (100% identity) | GCCGGC | Ngo2312ORF4880P |
| 4890 | 5-(carboxyamino)imidazole ribonucleotide | |||
| 7820 | V | V.Ngos1291ORF65P (90% identity) | V.Ngo2312ORF7835P | |
| ??? | R | Ngos1291ORF65P (100% identity) | CCGG | Ngo2312ORF7835P |
| ??? | M | M.Ngos1291ORF65P (100% identity) | M.Ngo2312ORF7835P | |
| 7845 | 48 aa hypothetical protein | |||
| 8935 | cysteine--tRNA ligase | |||
| 8940 | R | Ngos1291ORF4640P (100% identity) | RGCGCY | Ngo2312ORF8945P |
| 8945 | M | M.Ngos1291ORF4640P (100% identity) | RGCGCY | M.Ngo2312ORF8945P |
| 8950 | GTPase ObgE | |||
| 9415 | RNA-binding transcriptional accessory protein | |||
| 9420 | M | M1.NmeM395ORFJP (98% identity) | GGTGA | M1.Ngo2312ORF9420P |
| 9425 | M | M1.Ngos1291II (100% identity) | GGTGA | M2.Ngo2312ORF9420P |
| 9430 | R | NgoPID18ORF1848P (100% identity) | GGTGA | Ngo2312ORF9420P |
| 9435 | IS5/IS1182 family transposase | |||
| 9955 | ribosome recycling factor | |||
| 9960 | M | M.Ngos1291ORF3515P (100% identity) | GGCC | M.Ngo2312ORF9960P |
| 9965 | R | Ngos1291ORF3515P (100% identity) | GGCC | Ngo2312ORF9960P |
| 9970 | FUSC family protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3405 | alpha-hydroxy-acid oxidizing protein | |||
| 3410 | R | NgoJH13ORFHP (100% identity) | Ngo2312ORF3415P | |
| 3415 | M | M.NgoJH8ORFHP (100% identity) | M.Ngo2312ORF3415BP | |
| 3420 | M | M.NgoJH16ORFDP (51% identity) | M.Ngo2312ORF3415AP | |
| 3425 | tRNA pseudouridine(55) synthase TruB | |||