Escherichia coli isolate 10 |
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Putative Escherichia coli isolate 10 RM systems
Ref: Alioto,T. et al. unpublished
REBASE ref # 33419
| Sequence length: | GenBank #: | |
| chromosome main: | 4,862,596 bp | OW968288 |
| chromosome main: | 4,869,560 bp | OW967975 |
| chromosome main: | 4,877,427 bp | OW968124 |
| plasmid P2: | 103,714 bp | OW967977 |
| plasmid P2: | 90,448 bp | OW968290 |
| plasmid P3: | 78,039 bp | OW968291 |
| plasmid P4: | 58,272 bp | OW968292 |
REBASE acronym: Ecoi10
Org_num: 58619
All begin AI2852V1_, AI2852V1_REPA, AI2853V1_, AI2853V1_REPA, AI2981V1_, AI2981V1_REPA
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome main | ||||
| 320 | Cell division protein DamX | |||
| 321 | M | M.UbaC1152DamP (100% identity) | GATC | M.Ecoi10bDamP |
| 322 | Ribulose-phosphate 3-epimerase | |||
| 440 | 59 aa hypothetical protein | |||
| 441 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.Ecoi10bORF441P |
| 442 | DNA-binding protein Fis | |||
| 1737 | 142 aa hypothetical protein | |||
| 1738 | M | M.Ecoppa8DcmP (100% identity) | CCWGG | M.Ecoi10bDcmP |
| 1739 | V | V.SflSTLE3DcmP (100% identity) | CCWGG | V.Ecoi10bDcmP |
| 1740 | inner membrane transporter YedA | |||
| 2131 | 140 aa hypothetical protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.Ecoi10bORF2132P | |
| 178 | ISSfl4 ORF3 | |||
| 2925 | 804 aa hypothetical protein | |||
| 2926 | M | M.SflP099ORF15630P (100% identity) | GATC | M.Ecoi10bORF2926P |
| 2927 | 75 aa hypothetical protein | |||
| 3545 | 108 aa hypothetical protein | |||
| 3546 | M | M.Sso1099ORF23565P (100% identity) | M.Ecoi10bORF3546P | |
| 3547 | 64 aa hypothetical protein | |||
| 3932 | 428 aa hypothetical protein | |||
| 3933 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Ecoi10bORF3934P |
| 3934 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Ecoi10bORF3934P |
| 3935 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Ecoi10bORF3934P |
| 168 | 861 aa hypothetical protein EIMP302_30000 | |||
| chromosome main | ||||
| 321 | Cell division protein DamX | |||
| 322 | M | M.UbaC1152DamP (100% identity) | GATC | M.Ecoi10DamP |
| 323 | Ribulose-phosphate 3-epimerase | |||
| 441 | 59 aa hypothetical protein | |||
| 442 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.Ecoi10ORF442P |
| 443 | DNA-binding protein Fis | |||
| 1740 | 142 aa hypothetical protein | |||
| 1741 | M | M.Ecoppa8DcmP (100% identity) | CCWGG | M.Ecoi10DcmP |
| 1742 | V | V.SflSTLE3DcmP (100% identity) | CCWGG | V.Ecoi10DcmP |
| 1743 | inner membrane transporter YedA | |||
| 2135 | 140 aa hypothetical protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.Ecoi10ORF2136P | |
| 174 | ISSfl4 ORF3 | |||
| 3228 | 64 aa hypothetical protein | |||
| 3229 | M | M.EcosE1ORFAP (100% identity) | M.Ecoi10ORF3229P | |
| 3230 | 64 aa hypothetical protein | |||
| 3836 | 71 aa hypothetical protein | |||
| 3837 | M | M.Sdy9764ORFEP (100% identity) | M.Ecoi10ORF3837P | |
| 3838 | 67 aa hypothetical protein | |||
| 3848 | LexA repressor | |||
| 3849 | M | M.Sso30ORF925P (100% identity) | GATC | M.Ecoi10ORF3849P |
| 3850 | 164 aa hypothetical protein | |||
| chromosome main | ||||
| 321 | Cell division protein DamX | |||
| 322 | M | M.UbaC1152DamP (100% identity) | GATC | M.Ecoi10aDamP |
| 323 | Ribulose-phosphate 3-epimerase | |||
| 441 | 59 aa hypothetical protein | |||
| 442 | M | M.SflSTLE4ORF2240P (100% identity) | ATGCAT | M.Ecoi10aORF442P |
| 443 | DNA-binding protein Fis | |||
| 1735 | 142 aa hypothetical protein | |||
| 1736 | M | M.Ecoppa8DcmP (100% identity) | CCWGG | M.Ecoi10aDcmP |
| 1737 | V | V.SflSTLE3DcmP (100% identity) | CCWGG | V.Ecoi10aDcmP |
| 1738 | inner membrane transporter YedA | |||
| 2129 | 140 aa hypothetical protein | |||
| ??? | M | M.SsoSE61ORF20220P (100% identity) | M.Ecoi10aORF2130P | |
| 173 | ISSfl4 ORF3 | |||
| 3237 | 64 aa hypothetical protein | |||
| 3238 | M | M.EcosE1ORFAP (100% identity) | M.Ecoi10aORF3238P | |
| 3239 | 64 aa hypothetical protein | |||
| 3845 | 71 aa hypothetical protein | |||
| 3846 | M | M.Sdy9764ORFEP (100% identity) | M.Ecoi10aORF3846P | |
| 3847 | 67 aa hypothetical protein | |||
| 3857 | LexA repressor | |||
| 3858 | M | M.Sso30ORF925P (100% identity) | GATC | M.Ecoi10aORF3858P |
| 3859 | 164 aa hypothetical protein | |||
| 3955 | 428 aa hypothetical protein | |||
| 3956 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Ecoi10aORF3957P |
| 3957 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Ecoi10aORF3957P |
| 3958 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Ecoi10aORF3957P |
| 164 | 861 aa hypothetical protein EIMP302_30000 | |||
| plasmid P2 | ||||
| 4696 | 308 aa hypothetical protein | |||
| 4697 | M | M.SspPIBORF23080P (100% identity) | M.Ecoi10ORF4697P | |
| 4698 | 73 aa hypothetical protein | |||
| plasmid P2 | ||||
| 4713 | 308 aa hypothetical protein | |||
| 4714 | M | M.Sfl60ORF25670P (100% identity) | SAY | M.Ecoi10bORF4714P |
| 4715 | 73 aa hypothetical protein | |||
| plasmid P3 | ||||
| 4853 | 73 aa hypothetical protein | |||
| 4854 | M | M.Sen752ORF22960P (98% identity) | M.Ecoi10bORF4854P | |
| 4855 | SOS response-associated peptidase YedK | |||
| 4863 | 133 aa hypothetical protein | |||
| 4864 | R | KmiBD177ORF31210P (96% identity) | Ecoi10bORF4865P | |
| 4865 | M | M.PcoP1ORFDP (95% identity) | M.Ecoi10bORF4865P | |
| 4866 | transposon Tn552 DNA-invertase bin3 | |||
| plasmid P4 | ||||
| 4885 | Plasmid segregation protein ParM | |||
| 4886 | M | M.Sen624ORF24870P (100% identity) | M.Ecoi10bORF4886P | |
| 4887 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome main | ||||
| 3944 | teichuronic acid biosynthesis | |||
| 3945 | R | EcosS3McrBP (100% identity) | Ecoi10McrBP | |
| 3946 | R | EcosS9McrCP (100% identity) | Ecoi10McrCP | |
| 3947 | 579 aa hypothetical protein | |||
| chromosome main | ||||
| 3953 | teichuronic acid biosynthesis | |||
| 3954 | R | EcosS3McrBP (100% identity) | Ecoi10aMcrBP | |
| 3955 | R | EcosS9McrCP (100% identity) | Ecoi10aMcrCP | |
| 3956 | 579 aa hypothetical protein | |||