Escherichia coli isolate 648 |
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Putative Escherichia coli isolate 648 RM systems
Ref: Alioto,T. et al. unpublished
REBASE ref # 33419
| Sequence length: | GenBank #: | |
| chromosome main: | 5,101,183 bp | OW967966 |
| plasmid P1: | 107,837 bp | OW967967 |
| plasmid P4: | 5,593 bp | OW967970 |
REBASE acronym: Ecoi648
Org_num: 58626
All begin AI2858V1_, AI2858V1_REPA
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome main | ||||
| 317 | 95 aa hypothetical protein | |||
| 318 | R | Sma1978ORFBP (100% identity) | ACGNNNNNGTTG | Ecoi648ORF323P |
| 319 | Chromosome partition protein Smc | |||
| 320 | 387 aa hypothetical protein | |||
| 321 | S | S.Sma1978ORFBP (100% identity) | ACGNNNNNGTTG | S.Ecoi648ORF323P |
| 322 | 371 aa hypothetical protein | |||
| 323 | M | M.Sma1978ORFBP (100% identity) | ACGNNNNNGTTG | M.Ecoi648ORF323P |
| 324 | 400 aa hypothetical protein | |||
| plasmid P1 | ||||
| 265 | IS1 ORF2 | |||
| 4941 | R | EcosR11ORF25685P (100% identity) | CAAYNNNNNCTGG | Ecoi648ORF4943P |
| 4942 | S | S.SenBR076ORFFP (100% identity) | CAAYNNNNNCTGG | S.Ecoi648ORF4943P |
| 4943 | M | M.KpnKPA1ORF26345P (80% identity) | CAAYNNNNNCTGG | M.Ecoi648ORF4943P |
| 4944 | 73 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome main | ||||
| 425 | Cell division protein DamX | |||
| 426 | M | M.SspPIBDamP (100% identity) | GATC | M.Ecoi648DamP |
| 427 | Ribulose-phosphate 3-epimerase | |||
| 526 | 59 aa hypothetical protein | |||
| ??? | M | M.Ecos142ORF2405P (100% identity) | ATGCAT | M.Ecoi648ORF527P |
| 529 | DNA-binding protein Fis | |||
| 1401 | 64 aa hypothetical protein | |||
| 1402 | M | M.EcoEC0155ORF12710P (99% identity) | M.Ecoi648ORF1402P | |
| 1403 | 99 aa hypothetical protein | |||
| 1599 | 160 aa hypothetical protein | |||
| 1600 | M | M.SdyFF10ORF21495P (100% identity) | GATC | M.Ecoi648ORF1600P |
| 1601 | LexA repressor | |||
| 2029 | 231 aa hypothetical protein | |||
| 2030 | M | M.Ecod58DcmP (100% identity) | CCWGG | M.Ecoi648DcmP |
| 2031 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.Ecoi648DcmP |
| 2032 | inner membrane transporter YedA | |||
| 2684 | Anti-adapter protein IraM | |||
| 2685 | M | M.SsoL4094ORF17545P (100% identity) | A | M.Ecoi648ORF2685P |
| 2686 | 65 aa hypothetical protein | |||
| 3181 | 804 aa hypothetical protein | |||
| 3182 | M | M.SspS13ORF8710P (100% identity) | GATC | M.Ecoi648ORF3182P |
| 3183 | 75 aa hypothetical protein | |||
| 4144 | 9-O-acetyl-N-acetylneuraminic acid | |||
| ??? | R | SflN116ORF19475P (100% identity) | Ecoi648ORF4145P | |
| 4146 | 100 aa hypothetical protein | |||
| plasmid P1 | ||||
| 4922 | 73 aa hypothetical protein | |||
| 4923 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Ecoi648ORF4923P |
| 4924 | 308 aa hypothetical protein | |||
| plasmid P4 | ||||
| 5018 | Regulatory protein rop | |||
| 5019 | M | M.SsoI (100% identity) | GAATTC | M.Ecoi648ORF5019P |
| 5020 | R | SsoI (100% identity) | GAATTC | Ecoi648ORF5019P |
| 5021 | hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome main | ||||
| 4146 | 100 aa hypothetical protein | |||
| 4147 | R | Eco70745ORF26295BP (97% identity) | Ecoi648ORF4147P | |
| 4148 | Beta-lactamase CTX-M-1 | |||
| 198 | transposase | |||
| 4160 | R | SflN116ORF19490P (36% identity) | Ecoi648ORF4161P | |
| 4161 | M | M.SflN116ORF19490P (49% identity) | M.Ecoi648ORF4161P | |
| 25 | IS1 ORF2 | |||