Escherichia coli isolate 410 |
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Putative Escherichia coli isolate 410 RM systems
Ref: Alioto,T. et al. unpublished
REBASE ref # 33419
| Sequence length: | GenBank #: | |
| chromosome main: | 4,742,000 bp | OW967802 |
| plasmid P1: | 109,109 bp | OW967803 |
REBASE acronym: Ecoi410
Org_num: 58621
All begin AI2843V1_, AI2843V1_REPA
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome main | ||||
| 19 | IS1 ORF2 | |||
| 1131 | R | Sen12509ORF5865P (86% identity) | ACAYNNNNCTG | Ecoi410ORF1133P |
| 1132 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.Ecoi410ORF1133P |
| 1133 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.Ecoi410ORF1133P |
| 1134 | Nucleoid occlusion protein | |||
| 2666 | 81 aa hypothetical protein | |||
| 2667 | M | M.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | M.Ecoi410ORF2667P |
| 2668 | S | S.Ecos2020ORFCP (100% identity) | YTCANNNNNNGTTY | S.Ecoi410ORF2667P |
| 2669 | 218 aa hypothetical protein | |||
| 2670 | 355 aa hypothetical protein | |||
| 2671 | R | Sbo49812IP (99% identity) | YTCANNNNNNGTTY | Ecoi410ORF2667P |
| 2672 | 238 aa hypothetical protein | |||
| plasmid P1 | ||||
| 201 | IS1 ORF2 | |||
| 4515 | R | EcosR11ORF25685P (100% identity) | CAAYNNNNNNCTGG | Ecoi410ORF4517P |
| 4516 | S | S.SenceORFJP (100% identity) | CAAYNNNNNNCTGG | S.Ecoi410ORF4517P |
| 4517 | M | M.KpnKPA1ORF26345P (100% identity) | CAAYNNNNNNCTGG | M.Ecoi410ORF4517P |
| 4518 | 73 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome main | ||||
| 386 | Cell division protein DamX | |||
| 387 | M | M.UbaC1152DamP (100% identity) | GATC | M.Ecoi410DamP |
| 388 | Ribulose-phosphate 3-epimerase | |||
| 506 | 59 aa hypothetical protein | |||
| 507 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Ecoi410ORF507P |
| 508 | DNA-binding protein Fis | |||
| 1760 | 231 aa hypothetical protein | |||
| 1761 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.Ecoi410DcmP |
| 1762 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.Ecoi410DcmP |
| 1763 | inner membrane transporter YedA | |||
| 3803 | 269 aa hypothetical protein | |||
| ??? | R | SenNWU5ORF1685P (100% identity) | RCCGGY | Ecoi410ORF3805P |
| 3805 | M | M.SenUA38ORF610P (100% identity) | RCCGGY | M.Ecoi410ORF3805P |
| 3806 | Prophage integrase IntS | |||
| plasmid P1 | ||||
| 4496 | 73 aa hypothetical protein | |||
| 4497 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Ecoi410ORF4497P |
| 4498 | 308 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome main | ||||
| 2531 | Isocitrate dehydrogenase [NADP] | |||
| 2532 | R | EcosEC27McrCP (100% identity) | Ecoi410McrCP | |
| 2533 | R | Ecos2020McrBP (98% identity) | Ecoi410McrBP | |
| 17 | 256 aa hypothetical protein | |||