Escherichia coli C289 |
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Putative Escherichia coli C289 RM systems
Ref: DelaFuente,J. et al. unpublished
REBASE ref # 34581
| Sequence length: | GenBank #: | |
| Chromosome: | 4,727,328 bp | CP097426 |
| plasmid unnamed1: | 87,915 bp | CP097427 |
| plasmid unnamed2: | 70,092 bp | CP097428 |
REBASE acronym: EcoC289
Org_num: 58618
All begin M8Y67_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| plasmid unnamed2 | ||||
| 23585 | 62 aa hypothetical protein | |||
| 23590 | R | SenS1545ORF24780P (100% identity) | EcoC289ORF23595P | |
| 23595 | M | M.SenS1545ORF24780P (100% identity) | M.EcoC289ORF23595P | |
| 23600 | chromosome segregation protein SMC | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1655 | cell division protein DamX | |||
| 1660 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoC289DamP |
| 1665 | ribulose-phosphate 3-epimerase | |||
| 2280 | DUF2556 family protein | |||
| 2285 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoC289ORF2285P |
| 2290 | DNA-binding transcriptional regulator Fis | |||
| 8845 | phosphohydrolase | |||
| 8850 | M | M.SspS13DcmP (100% identity) | CCWGG | M.EcoC289DcmP |
| 8855 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.EcoC289DcmP |
| 8860 | drug/metabolite exporter YedA | |||
| 10890 | DUF977 family protein | |||
| 10895 | M | M.SsoSE61ORF20220P (100% identity) | M.EcoC289ORF10895P | |
| 10900 | IS66-like element ISEc22 family transposase | |||
| 14920 | replication endonuclease | |||
| 14925 | M | M.SflN92ORF14970P (100% identity) | GATC | M.EcoC289ORF14925P |
| 14930 | TraR/DksA family transcriptional regulator | |||
| 17910 | phage lysis protein EssD | |||
| 17915 | M | M.Sso63633ORF22290P (100% identity) | M.EcoC289ORF17915P | |
| 17920 | 95 aa hypothetical protein | |||
| 17955 | LexA family transcriptional regulator | |||
| 17960 | M | M.SflFF87ORF17870P (100% identity) | GATC | M.EcoC289ORF17960P |
| 17965 | PerC family transcriptional regulator | |||
| plasmid unnamed1 | ||||
| 23235 | 73 aa hypothetical protein | |||
| 23240 | M | M.Sfl712783ORFFP (100% identity) | M.EcoC289ORF23240P | |
| 23245 | 101 aa hypothetical protein | |||
| plasmid unnamed2 | ||||
| 23670 | 97 aa hypothetical protein | |||
| 23675 | M | M.EcoC288ORF23620P (100% identity) | M.EcoC289ORF23675P | |
| 23680 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8750 | shufflon system plasmid conjugative transfer | |||
| 8755 | R | EcoC288ORF8760P (100% identity) | CCGAG | EcoC289ORF8760P |
| 8760 | M | M.EcoC288ORF8760P (100% identity) | CCGAG | M.EcoC289ORF8760P |
| 8765 | SpnT protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19765 | HNH endonuclease | |||
| 19770 | R | SflSTLE4McrCP (100% identity) | EcoC289McrCP | |
| 19775 | R | SflSTLE4McrBP (100% identity) | EcoC289McrBP | |
| 19780 | DUF4942 domain-containing protein | |||