Citrobacter freundii isolate 22 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Citrobacter freundii isolate 22 RM systems
Ref: Alioto,T. et al. unpublished
REBASE ref # 33419
| Sequence length: | GenBank #: | |
| chromosome main: | 5,082,481 bp | OW967263 |
| chromosome main: | 5,150,246 bp | OW849527 |
| chromosome main: | 5,176,111 bp | OW969875 |
| plasmid P1: | 264,758 bp | OW969876 |
| plasmid P1: | 205,393 bp | OW849528 |
| plasmid P1: | 112,775 bp | OW967264 |
| plasmid P2: | 149,443 bp | OW849529 |
| plasmid P2: | 99,059 bp | OW967265 |
| plasmid P2: | 158,488 bp | OW969877 |
| plasmid P4: | 40,836 bp | OW967267 |
| plasmid P4: | 100,558 bp | OW969879 |
| plasmid P5: | 53,579 bp | OW969880 |
| plasmid P6: | 41,032 bp | OW969881 |
REBASE acronym: Cfri22
Org_num: 58412
All begin AI2661V1_, AI2826V1_, AI3059V2_, AI3059V2_REPA
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| plasmid P5 | ||||
| 5668 | 136 aa hypothetical protein | |||
| 5669 | M | M.KpnN11aORF30P (100% identity) | GAGNNNNNNRTTT | M.Cfr22bORF5669P |
| 5670 | S | S.EcoI23ORF31P (100% identity) | GAGNNNNNNRTTT | S.Cfr22bORF5669P |
| 5671 | R | KpnN11aORF30P (100% identity) | GAGNNNNNNRTTT | Cfr22bORF5669P |
| 218 | 139 aa hypothetical protein KPZU40_51800 | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome main | ||||
| 360 | Cell division protein DamX | |||
| 361 | M | M.Eco5172DamP (100% identity) | GATC | M.Cfr22bDamP |
| 362 | Ribulose-phosphate 3-epimerase | |||
| 463 | 54 aa hypothetical protein | |||
| 464 | M | M.Eco5172ORF4078P (100% identity) | ATGCAT | M.Cfr22bORF464P |
| 465 | Prophage integrase IntA | |||
| 858 | 127 aa hypothetical protein | |||
| 859 | M | M.CfrF3517ORF4615P (100% identity) | M.Cfr22bORF859P | |
| 860 | 75 aa hypothetical protein | |||
| 860 | 75 aa hypothetical protein | |||
| ??? | M | M.CfrF3517ORF4625P (100% identity) | M.Cfr22bORF861P | |
| 862 | 878 aa hypothetical protein | |||
| 864 | 66 aa hypothetical protein | |||
| 865 | M | M.SenS021ORF22590P (75% identity) | M.Cfr22bORF865P | |
| 866 | 54 aa hypothetical protein | |||
| 2068 | 72 aa hypothetical protein | |||
| 2069 | M | M.CspSL156ORF10315P (100% identity) | M.Cfr22bORF2069P | |
| 2070 | 291 aa hypothetical protein | |||
| 2174 | inner membrane transporter YedA | |||
| 2175 | V | V.CyoL6ORF9385P (100% identity) | V.Cfr22bORF2176P | |
| 2176 | M | M.CspSL156ORF9755P (97% identity) | CCWGG | M.Cfr22bORF2176P |
| 2177 | 230 aa hypothetical protein | |||
| 3892 | 52 aa hypothetical protein | |||
| 3893 | M | M.Cfri22aORF3913P (100% identity) | M.Cfr22bORF3893P | |
| 3894 | 79 aa hypothetical protein | |||
| 4272 | 211 aa hypothetical protein | |||
| 4273 | R | Cfri22aORF4250P (100% identity) | Cfr22bORF4273P | |
| 4274 | 30 aa hypothetical protein | |||
| 4553 | 128 aa hypothetical protein | |||
| 4554 | M | M.Cfr502ORF8225P (100% identity) | M.Cfr22bORF4554P | |
| 4555 | 63 aa hypothetical protein | |||
| 4559 | Crossover junction endodeoxyribonuclease RusA | |||
| 4560 | M | M2.Sens24230ORF8785P (99% identity) | M1.Cfr22bORF4560P | |
| 4561 | M | M1.Cbr9ORF26660P (98% identity) | M2.Cfr22bORF4560P | |
| 4562 | 285 aa hypothetical protein | |||
| chromosome main | ||||
| 357 | Cell division protein DamX | |||
| 358 | M | M.Eco5172DamP (100% identity) | GATC | M.Cfri22aDamP |
| 359 | Ribulose-phosphate 3-epimerase | |||
| 459 | 54 aa hypothetical protein | |||
| 460 | M | M.Eco5172ORF4078P (100% identity) | ATGCAT | M.Cfri22aORF460P |
| 461 | Prophage integrase IntA | |||
| 1207 | 214 aa hypothetical protein | |||
| 1208 | M | M.Cpo71727ORF11610P (99% identity) | M.Cfri22aORF1208P | |
| 1209 | 136 aa hypothetical protein | |||
| 1840 | 230 aa hypothetical protein | |||
| 1841 | M | M.CspSL156ORF9755P (97% identity) | CCWGG | M.Cfri22aORF1841P |
| 1842 | V | V.CyoL6ORF9385P (100% identity) | V.Cfri22aORF1841P | |
| 1843 | inner membrane transporter YedA | |||
| 1962 | 291 aa hypothetical protein | |||
| 1963 | M | M.CspSL156ORF10315P (100% identity) | M.Cfri22aORF1963P | |
| 1964 | 72 aa hypothetical protein | |||
| 3912 | 52 aa hypothetical protein | |||
| 3913 | M | M.Cfr22bORF3893P (100% identity) | M.Cfri22aORF3913P | |
| 3914 | 79 aa hypothetical protein | |||
| chromosome main | ||||
| 357 | Cell division protein DamX | |||
| 358 | M | M.Eco5172DamP (100% identity) | GATC | M.Cfri22DamP |
| 359 | Ribulose-phosphate 3-epimerase | |||
| 461 | 54 aa hypothetical protein | |||
| 462 | M | M.Eco5172ORF4078P (100% identity) | ATGCAT | M.Cfri22ORF462P |
| 463 | Prophage integrase IntA | |||
| 1249 | 214 aa hypothetical protein | |||
| 1250 | M | M.Cfr112ORF1336P (99% identity) | M.Cfri22ORF1250P | |
| 1251 | 136 aa hypothetical protein | |||
| 1877 | 230 aa hypothetical protein | |||
| 1878 | M | M.CspSL156ORF9755P (97% identity) | CCWGG | M.Cfri22ORF1878P |
| 1879 | V | V.CyoL6ORF9385P (96% identity) | V.Cfri22ORF1878P | |
| 1880 | inner membrane transporter YedA | |||
| 4271 | 211 aa hypothetical protein | |||
| 4272 | R | Cfri22aORF4250P (100% identity) | Cfri22ORF4272P | |
| 4273 | 30 aa hypothetical protein | |||
| plasmid P1 | ||||
| 4839 | 73 aa hypothetical protein | |||
| 4840 | M | M.EhoEhh24ORF24435P (100% identity) | M.Cfri22aORF4840P | |
| 4841 | 115 aa hypothetical protein | |||
| plasmid P1 | ||||
| 5071 | 55 aa hypothetical protein | |||
| 5072 | M | M.SenZC055ORF26240P (100% identity) | CCWGG | M.Cfr22bORF5072P |
| 5073 | Endonuclease YhcR | |||
| 5131 | 102 aa hypothetical protein | |||
| 5132 | M | M.SenF8025ORFAP (86% identity) | M.Cfr22bORF5132P | |
| 5133 | Polyamine aminopropyltransferase | |||
| 5205 | 384 aa hypothetical protein | |||
| 5206 | M | M1.SenF8025ORFBP (100% identity) | M.Cfr22bORF5206P | |
| 5207 | 273 aa hypothetical protein | |||
| plasmid P1 | ||||
| 4991 | DNA polymerase III subunit beta | |||
| 4992 | M | M.Sen3039ORF24445P (100% identity) | GATC | M.Cfri22ORF4992P |
| 4993 | 76 aa hypothetical protein | |||
| plasmid P2 | ||||
| 5013 | 73 aa hypothetical protein | |||
| 5014 | M | M.Kpni11ayORF5166P (100% identity) | M.Cfri22aORF5014P | |
| 5015 | SOS response-associated peptidase YedK | |||
| 5020 | 708 aa hypothetical protein | |||
| 5021 | R | SmaBWH35ORF16650P (100% identity) | CCWGG | Cfri22aORF5022P |
| 5022 | M | M.SmaBWH35ORF16650P (100% identity) | CCWGG | M.Cfri22aORF5022P |
| 5023 | 712 aa hypothetical protein | |||
| plasmid P2 | ||||
| 5358 | 708 aa hypothetical protein | |||
| 5359 | R | SmaBWH35ORF16650P (100% identity) | CCWGG | Cfr22bORF5360P |
| 5360 | M | M.SmaBWH35ORF16650P (100% identity) | CCWGG | M.Cfr22bORF5360P |
| 5361 | 712 aa hypothetical protein | |||
| plasmid P2 | ||||
| 5242 | 712 aa hypothetical protein | |||
| 5243 | M | M.SmaBWH35ORF16650P (100% identity) | CCWGG | M.Cfri22ORF5243P |
| 5244 | R | Kpn9645ORFAP (100% identity) | CCWGG | Cfri22ORF5243P |
| 5245 | 708 aa hypothetical protein | |||
| 5250 | SOS response-associated peptidase YedK | |||
| 5251 | M | M.Kpni11ayORF5166P (100% identity) | M.Cfri22ORF5251P | |
| 5252 | 73 aa hypothetical protein | |||
| plasmid P4 | ||||
| 5560 | 115 aa hypothetical protein | |||
| 5561 | M | M.EhoEhh24ORF24435P (100% identity) | M.Cfr22bORF5561P | |
| 5562 | 73 aa hypothetical protein | |||
| plasmid P4 | ||||
| 5171 | 190 aa hypothetical protein | |||
| 5172 | R | Sma31ORF25925P (96% identity) | CTCGAG | Cfri22aORF5172P |
| 5173 | 82 aa hypothetical protein | |||
| plasmid P6 | ||||
| 5753 | 190 aa hypothetical protein | |||
| 5754 | R | Sma31ORF25925P (96% identity) | CTCGAG | Cfr22bORF5754P |
| 5755 | 82 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| plasmid P2 | ||||
| 5291 | Transposon Tn3 resolvase | |||
| 5292 | M | M.Yenp29930ORFAP (100% identity) | CCGCAG | M.Cfr22bORF5292P |
| 5293 | R | Kqu14AORF27805P (98% identity) | CCGCAG | Cfr22bORF5292P |
| 151 | IS1 ORF2 | |||