Citrobacter freundii isolate 112 |
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Putative Citrobacter freundii isolate 112 RM systems
Ref: Alioto,T. et al. unpublished
REBASE ref # 33419
| Sequence length: | GenBank #: | |
| chromosome main: | 5,066,607 bp | OW848788 |
| chromosome main: | 5,218,036 bp | OW995941 |
| plasmid P1: | 250,090 bp | OW995942 |
| plasmid P2: | 38,483 bp | OW848790 |
| plasmid P3: | 86,953 bp | OW995944 |
REBASE acronym: Cfr112
Org_num: 58407
All begin AI2602V1_, AI2935V1_, AI2935V1_REPA
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome main | ||||
| 1141 | 621 aa hypothetical protein | |||
| 1142 | M | M.EcoXJ52ORF3875P (100% identity) | M.Cfr112ORF1142P | |
| 1143 | S | S.EcoXJ52ORF3875P (100% identity) | S.Cfr112ORF1142P | |
| 1144 | R | Eco13438ORF4455P (100% identity) | Cfr112ORF1142P | |
| 1145 | 112 aa hypothetical protein | |||
| 4150 | Mrr restriction system protein | |||
| 4151 | R | CfrPSVORF4296P (99% identity) | Cfr112ORF4152P | |
| 4152 | M | M.CfrR47ORF11150P (99% identity) | M.Cfr112ORF4152P | |
| 4153 | S | S.CspCF971ORF7160P (100% identity) | S.Cfr112ORF4152P | |
| 4154 | Toxic protein SymE | |||
| chromosome main | ||||
| 789 | 260 aa hypothetical protein | |||
| 790 | R | CfrSK3ORF3795P (100% identity) | TTACNNNNNTAYC | Cfr112ORF791P |
| 791 | M | M.Cfr1443ORF5620P (99% identity) | TTACNNNNNTAYC | M.Cfr112ORF791P |
| 792 | S | S.CfrSK3ORF3795P (100% identity) | TTACNNNNNTAYC | S.Cfr112ORF791P |
| 793 | 153 aa hypothetical protein | |||
| 4340 | 206 aa hypothetical protein | |||
| 4341 | M | M.Cpo157ORF4204P (99% identity) | GATGNNNNNCTG | M.Cfr112ORF4341P |
| 4342 | S | S.Cyo13708I (99% identity) | GATGNNNNNCTG | S.Cfr112ORF4341P |
| 4343 | R | Cpo157ORF4204P (99% identity) | GATGNNNNNCTG | Cfr112ORF4341P |
| 4344 | 434 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome main | ||||
| 343 | Cell division protein DamX | |||
| 344 | M | M.Eco5172DamP (100% identity) | GATC | M.Cfr112DamP |
| 345 | Ribulose-phosphate 3-epimerase | |||
| 728 | 70 aa hypothetical protein | |||
| 729 | M | M.CyoL6ORF16030P (98% identity) | M.Cfr112ORF729P | |
| 730 | 109 aa hypothetical protein | |||
| 753 | DNA primase TraC | |||
| 754 | R | Cfr24C05ORF16470P (100% identity) | Cfr112ORF754P | |
| 755 | Invasin | |||
| 1335 | 214 aa hypothetical protein | |||
| 1336 | M | M.Cfri22ORF1250P (99% identity) | M.Cfr112ORF1336P | |
| 1337 | 136 aa hypothetical protein | |||
| 1991 | 230 aa hypothetical protein | |||
| 1992 | M | M.CspMGH103ORFHP (97% identity) | CCWGG | M.Cfr112ORF1992P |
| 1993 | V | V.CspS39ORF13780P (100% identity) | CCWGG | V.Cfr112ORF1992P |
| 1994 | inner membrane transporter YedA | |||
| 4184 | Toxic protein SymE | |||
| 4185 | R | Cfr13639ORF4970P (100% identity) | Cfr112ORF4185P | |
| 4186 | 6-carboxy-5%2C6%2C7%2C8-tetrahydropterin | |||
| chromosome main | ||||
| 333 | Cell division protein DamX | |||
| 334 | M | M.Eco5172DamP (100% identity) | GATC | M.Cfr112DamP |
| 335 | Ribulose-phosphate 3-epimerase | |||
| 1539 | 104 aa hypothetical protein | |||
| 1540 | M | M.CfrSK3ORF14860P (100% identity) | M.Cfr112ORF1540P | |
| 1541 | 152 aa hypothetical protein | |||
| 1734 | 288 aa hypothetical protein | |||
| 1735 | M | M.CgiC3ORF24720P (98% identity) | M.Cfr112ORF1735P | |
| 1736 | Crossover junction endodeoxyribonuclease RusA | |||
| 1908 | 129 aa hypothetical protein | |||
| 1909 | M | M.CfrF3517ORF4615P (98% identity) | M1.Cfr112ORF1909P | |
| 1910 | 66 aa hypothetical protein | |||
| ??? | M | M1.Sens29879ORF23270P (90% identity) | M2.Cfr112ORF1909P | |
| 1912 | 866 aa hypothetical protein | |||
| 2105 | 230 aa hypothetical protein | |||
| 2106 | M | M.CspMGH103ORFHP (97% identity) | CCWGG | M.Cfr112ORF1992P |
| 2107 | V | V.CspS39ORF13780P (100% identity) | CCWGG | V.Cfr112ORF1992P |
| 2108 | inner membrane transporter YedA | |||
| 2469 | 103 aa hypothetical protein | |||
| 2470 | M | M.Cfr13639ORF2801P (100% identity) | M.Cfr112ORF2470P | |
| 137 | transposase insH for insertion sequence element IS5R | |||
| 4322 | 211 aa hypothetical protein | |||
| 4323 | R | Cfr13639ORF4970P (100% identity) | Cfr112ORF4185P | |
| 4324 | 264 aa hypothetical protein | |||
| plasmid P1 | ||||
| 5061 | 55 aa hypothetical protein | |||
| 5062 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.Cfr112ORF5062P |
| 5063 | Endonuclease YhcR | |||
| 5176 | 106 aa hypothetical protein | |||
| 5177 | M | M.Ssp15303ORFDP (100% identity) | M.Cfr112ORF5177P | |
| 5178 | Polyamine aminopropyltransferase | |||
| 5205 | 387 aa hypothetical protein | |||
| 5206 | M | M.Ssp15303ORFEP (95% identity) | M.Cfr112ORF5206P | |
| 5207 | 284 aa hypothetical protein | |||
| plasmid P2 | ||||
| 4925 | 190 aa hypothetical protein | |||
| 4926 | R | Sma31ORF25925P (96% identity) | CTCGAG | Cfr112ORF4926P |
| 4927 | 82 aa hypothetical protein | |||
| plasmid P3 | ||||
| 5343 | DNA-invertase hin | |||
| 5344 | R | YpsR2ORFAP (100% identity) | CCWGG | Cfr112ORF5345P |
| 5345 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.Cfr112ORF5345P |
| 194 | transposase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome main | ||||
| 630 | 208 aa hypothetical protein | |||
| 631 | M | M.Eco9067ORF712P (100% identity) | M.Cfr112ORF631P | |
| 127 | pseudogene | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome main | ||||
| 4745 | 101 aa hypothetical protein | |||
| 4746 | M | M.CfrSK3ORF25330P (100% identity) | M.Cfr112ORF4746P | |
| 4747 | 70 aa hypothetical protein | |||