Serratia marcescens |
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Putative Serratia marcescens RM systems
Ref: Alioto,T. et al. unpublished
REBASE ref # 33419
| Sequence length: | GenBank #: | |
| chromosome main: | 5,186,011 bp | OW967878 |
| chromosome main: | 5,186,895 bp | OW968016 |
| chromosome main: | 5,187,671 bp | OW967830 |
| chromosome main: | 5,034,972 bp | OW967953 |
| chromosome main: | 5,186,317 bp | OW849111 |
| chromosome main: | 5,154,103 bp | OW849139 |
| chromosome main: | 5,429,141 bp | OW849155 |
| chromosome main: | 5,480,730 bp | OW849491 |
| plasmid P1: | 194,555 bp | OW849492 |
| plasmid P1: | 84,132 bp | OW849140 |
REBASE acronym: Sma0a
Org_num: 58854
All begin AI2616V1_, AI2617V1_, AI2617V1_REPA, AI2618V1_, AI2618V1_REPA, AI2795V1_, AI2857V1_, AI2872V1_, AI2884V1_, AI2887V1_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome main | ||||
| 459 | 181 aa hypothetical protein | |||
| 460 | M | M.Sma14VA4ORF47300P (99% identity) | M.Sma0bORF460P | |
| 461 | S | S.Sma14VA4ORF47300P (100% identity) | S.Sma0bORF460P | |
| 462 | R | Sma14VA4ORF47300P (100% identity) | Sma0bORF460P | |
| 463 | 5-methylcytosine-specific restriction enzyme B | |||
| chromosome main | ||||
| 2247 | Oxalate decarboxylase OxdD | |||
| 2248 | R | Sma0aORF2249P (100% identity) | Sma0gORF2249P | |
| 2249 | M | M.Sma0aORF2249P (100% identity) | M.Sma0gORF2249P | |
| 2250 | S | S.Sma0aORF2249P (100% identity) | S.Sma0gORF2249P | |
| 2251 | 367 aa hypothetical protein | |||
| chromosome main | ||||
| 2247 | Oxalate decarboxylase OxdD | |||
| 2248 | R | Sma0gORF2249P (100% identity) | Sma0aORF2249P | |
| 2249 | M | M.Sma0gORF2249P (100% identity) | M.Sma0aORF2249P | |
| 2250 | S | S.Sma0gORF2249P (100% identity) | S.Sma0aORF2249P | |
| 2251 | 367 aa hypothetical protein | |||
| chromosome main | ||||
| 437 | 550 aa hypothetical protein | |||
| 438 | M | M.SspM0706ORF469P (100% identity) | CRAANNNNNNNRTGNNC | M.Sma0eORF438P |
| 439 | S | S.SspM0706ORF469P (100% identity) | CRAANNNNNNNRTGNNC | S.Sma0eORF438P |
| 440 | R | SspM0706ORF469P (100% identity) | CRAANNNNNNNRTGNNC | Sma0eORF438P |
| 441 | 5-methylcytosine-specific restriction enzyme B | |||
| 2263 | Oxalate decarboxylase OxdD | |||
| 2264 | R | SspM0706ORF2267P (100% identity) | DTAGNNNNNNNRTCC | Sma0eORF2265P |
| 2265 | M | M.SspM0706ORF2267P (100% identity) | DTAGNNNNNNNRTCC | M.Sma0eORF2265P |
| 2266 | S | S.SspM0706ORF2267P (100% identity) | DTAGNNNNNNNRTCC | S.Sma0eORF2265P |
| 2267 | 367 aa hypothetical protein | |||
| chromosome main | ||||
| 463 | 406 aa hypothetical protein | |||
| 464 | R | SmaQC11ORF47230P (100% identity) | Sma0fORF469P | |
| 465 | 391 aa hypothetical protein | |||
| 466 | S | S.SmaC1044ORF4157P (100% identity) | S.Sma0fORF469P | |
| 467 | 85 aa hypothetical protein | |||
| 29 | 79 aa hypothetical protein | |||
| 23 | transposase insH for insertion sequence element IS5R | |||
| 35 | pseudogene | |||
| 468 | 326 aa hypothetical protein | |||
| 57 | transposase insH for insertion sequence element IS5R | |||
| 6 | transposase | |||
| 469 | M | M.SmaQC11ORF47230P (90% identity) | M.Sma0fORF469P | |
| 470 | Mrr restriction system protein | |||
| chromosome main | ||||
| 457 | 406 aa hypothetical protein | |||
| 458 | R | SmaQC11ORF47230P (100% identity) | Sma0cORF458P | |
| 459 | 391 aa hypothetical protein | |||
| 460 | S | S.SmaC1044ORF4157P (100% identity) | S.Sma0cORF458P | |
| 461 | 85 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome main | ||||
| 414 | 624 aa hypothetical protein | |||
| 415 | M | M.Sma0aORF415P (100% identity) | M.Sma0gORF415P | |
| ??? | V | V.SspD04ORF7865P (100% identity) | V.Sma0gORF415P | |
| 416 | Aryl-phospho-beta-D-glucosidase BglH | |||
| 855 | Tyrosine recombinase XerD | |||
| 856 | M | M.Sma0aORF856P (100% identity) | M.Sma0gORF856P | |
| 857 | 62 aa hypothetical protein | |||
| 1763 | 86 aa hypothetical protein | |||
| 1764 | M | M.Sma0aORF1764P (100% identity) | M.Sma0gORF1764P | |
| 1765 | DNA polymerase III subunit epsilon | |||
| chromosome main | ||||
| 414 | 624 aa hypothetical protein | |||
| 415 | M | M.Sma0gORF415P (100% identity) | M.Sma0aORF415P | |
| ??? | V | V.SspD04ORF7865P (100% identity) | V.Sma0aORF415P | |
| 416 | Aryl-phospho-beta-D-glucosidase BglH | |||
| 855 | Tyrosine recombinase XerD | |||
| 856 | M | M.Sma0gORF856P (100% identity) | M.Sma0aORF856P | |
| 857 | 62 aa hypothetical protein | |||
| 1763 | 86 aa hypothetical protein | |||
| 1764 | M | M.Sma0gORF1764P (100% identity) | M.Sma0aORF1764P | |
| 1765 | DNA polymerase III subunit epsilon | |||
| chromosome main | ||||
| 451 | 707 aa hypothetical protein | |||
| 452 | RM | SspSCBORF2355P (97% identity) | Sma0ORF452P | |
| 453 | RNA polymerase-associated protein RapA | |||
| 453 | RNA polymerase-associated protein RapA | |||
| 454 | M | M.SurHNU47ORF2350P (90% identity) | M.Sma0ORF454P | |
| 455 | 88 aa hypothetical protein | |||
| 456 | 211 aa hypothetical protein | |||
| 457 | 629 aa hypothetical protein | |||
| 458 | R | R2.SmaBB16ORF11200P (93% identity) | Sma0ORF454P | |
| 459 | 105 aa hypothetical protein | |||
| chromosome main | ||||
| 427 | 687 aa hypothetical protein | |||
| 428 | M | M.SmaEM02ORF44980P (98% identity) | M.Sma0dORF428P | |
| ??? | V | V.SspD04ORF7865P (100% identity) | V.Sma0dORF428P | |
| 429 | Aryl-phospho-beta-D-glucosidase BglH | |||
| 1176 | 156 aa hypothetical protein | |||
| 1177 | M | M.SmaSCQ1ORF22260P (96% identity) | M.Sma0dORF1177P | |
| 1178 | 180 aa hypothetical protein | |||
| 1188 | 75 aa hypothetical protein | |||
| 1189 | M | M.Sma836ORF615P (97% identity) | M.Sma0dORF1189P | |
| 1190 | Crossover junction endodeoxyribonuclease RusA | |||
| 1778 | 842 aa hypothetical protein | |||
| 1779 | M | M1.Sma122010ORF9125P (98% identity) | M.Sma0dORF1779P | |
| 1780 | 89 aa hypothetical protein | |||
| 1780 | 89 aa hypothetical protein | |||
| 1781 | M | M.Sma36365ORF4713P (98% identity) | M.Sma0dORF1781P | |
| 1782 | 72 aa hypothetical protein | |||
| 3051 | Beta-galactosidase | |||
| 3052 | M | M.LadYZ30ORF15570P (86% identity) | M.Sma0dORF3052P | |
| 3053 | R | Hpa230IIP (82% identity) | Sma0dORF3052P | |
| 3054 | 190 aa hypothetical protein | |||
| chromosome main | ||||
| 1033 | Tyrosine recombinase XerD | |||
| 1034 | M | M.Sma4201ORF10940P (94% identity) | M.Sma0eORF1034P | |
| 1035 | 62 aa hypothetical protein | |||
| 3622 | 114 aa hypothetical protein | |||
| 3623 | M | M.Sma10VA1ORF31140P (100% identity) | M.Sma0eORF3623P | |
| 3624 | 161 aa hypothetical protein | |||
| chromosome main | ||||
| 1053 | 109 aa hypothetical protein | |||
| ??? | M | M.SmaQC11ORFAP (100% identity) | M.Sma0fORFAP | |
| 1054 | 52 aa hypothetical protein | |||
| 2034 | 58 aa hypothetical protein | |||
| 2035 | M | M.Sma1070ORF4182P (100% identity) | M.Sma0fORF2035P | |
| 2036 | 209 aa hypothetical protein | |||
| 2049 | 80 aa hypothetical protein | |||
| 2050 | M | M.Sma0cORF2043P (100% identity) | M.Sma0fORF2050P | |
| 2051 | 343 aa hypothetical protein | |||
| chromosome main | ||||
| 1044 | 109 aa hypothetical protein | |||
| ??? | M | M.SmaQC11ORFAP (100% identity) | M.Sma0cORFAP | |
| 1045 | 52 aa hypothetical protein | |||
| 2027 | 58 aa hypothetical protein | |||
| 2028 | M | M.Sma1070ORF4182P (100% identity) | M.Sma0cORF2028P | |
| 2029 | 209 aa hypothetical protein | |||
| 2042 | 80 aa hypothetical protein | |||
| 2043 | M | M.Sma0fORF2050P (100% identity) | M.Sma0cORF2043P | |
| 2044 | 343 aa hypothetical protein | |||
| 3443 | 245 aa hypothetical protein | |||
| 3444 | M | M.Sma11ORF2623P (96% identity) | M.Sma0cORF3444P | |
| 3445 | 337 aa hypothetical protein | |||
| 4140 | Prophage integrase IntS | |||
| 4141 | R | KpnSB611ORF4590P (99% identity) | GCWGC | Sma0cORF4141P |
| 4142 | HTH-type transcriptional regulator SinR | |||
| plasmid P1 | ||||
| 5064 | 100 aa hypothetical protein | |||
| 5065 | M | M.Ror108ORF28085P (100% identity) | CCNGG | M.Sma0cORF5065P |
| 5066 | 99 aa hypothetical protein | |||
| 5089 | 234 aa hypothetical protein | |||
| ??? | M | M.EhoEh65ORF23265P (100% identity) | M.Sma0cORFBP | |
| 107 | Major Facilitator Superfamily | |||
| plasmid P1 | ||||
| 4702 | 183 aa hypothetical protein | |||
| 4703 | M | M.Sma0dORF1177P (77% identity) | M.Sma0eORF4703P | |
| 4704 | 82 aa hypothetical protein | |||
| 4724 | Recombination-associated protein RdgC | |||
| 4725 | M | M.SspV002ORF29865P (74% identity) | M.Sma0eORF4725P | |
| 4726 | 82 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome main | ||||
| 3241 | 462 aa hypothetical protein | |||
| 3242 | M | M.SmaC1044ORF1801P (100% identity) | M.Sma0fORF3242P | |
| 3243 | R | SmaC1044ORF1801P (100% identity) | Sma0fORF3242P | |
| 3244 | 501 aa hypothetical protein | |||
| chromosome main | ||||
| 3240 | 462 aa hypothetical protein | |||
| 3241 | M | M.SmaC1044ORF1801P (100% identity) | M.Sma0cORF3241P | |
| 3242 | R | SmaC1044ORF1801P (100% identity) | Sma0cORF3241P | |
| 3243 | 501 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome main | ||||
| 462 | Type I restriction enzyme EcoR124II R protein | |||
| 463 | R | Sma14VA4McrBP (100% identity) | Sma0bMcrBP | |
| 464 | R | Sma14VA4McrCP (100% identity) | Sma0bMcrCP | |
| 465 | 372 aa hypothetical protein | |||
| chromosome main | ||||
| 456 | 211 aa hypothetical protein | |||
| 457 | R | KaeRX71GmrSDP (98% identity) | Sma0GmrSDP | |
| 458 | 253 aa hypothetical protein | |||
| chromosome main | ||||
| 440 | Type-1 restriction enzyme R protein | |||
| 441 | R | SspM0706McrBP (100% identity) | Sma0eMcrBP | |
| 442 | R | SspM0706McrCP (100% identity) | Sma0eMcrCP | |
| 443 | 372 aa hypothetical protein | |||
| chromosome main | ||||
| 469 | Type I restriction enzyme EcoKI M protein | |||
| 470 | R | SmaQC11MrrP (100% identity) | Sma0fMrrP | |
| 471 | 372 aa hypothetical protein | |||