Ref: Alioto,T. et al. unpublished

REBASE ref # 33419

Sequence length:GenBank #:
chromosome main: 4,644,587 bp OW849522
chromosome main: 4,720,661 bp OW967210
chromosome main: 4,716,089 bp OW967485
chromosome main: 4,667,670 bp OW967014
chromosome main: 4,740,944 bp OW849101
chromosome main: 4,847,468 bp OW849198
chromosome main: 4,840,363 bp OW849306
chromosome main: 4,720,539 bp OW849302
chromosome main: 4,862,064 bp OX030695
chromosome main: 4,779,216 bp OW849457
plasmid P1: 294,830 bp OW967211
plasmid P1: 107,168 bp OW849523
plasmid P1: 115,150 bp OW967486
plasmid P1: 270,215 bp OX030696
plasmid P1: 115,150 bp OW849102
plasmid P1: 281,514 bp OW849458
plasmid P1: 113,823 bp OW849307
plasmid P1: 294,830 bp OW849303
plasmid P1: 276,644 bp OW849199
plasmid P1: 115,150 bp OW967015
plasmid P2: 115,150 bp OW849459
plasmid P2: 120,105 bp OW849304
plasmid P2: 108,267 bp OW849103
plasmid P2: 115,150 bp OW849200
plasmid P2: 106,402 bp OW849308
plasmid P2: 204,760 bp OW967212
plasmid P2: 106,402 bp OW967016
plasmid P3: 104,655 bp OW849201
plasmid P3: 120,105 bp OW967213
plasmid P3: 95,152 bp OW967488
plasmid P3: 111,618 bp OW849460
plasmid P5: 46,638 bp OW849462

REBASE acronym:

Org_num:

 

All begin AI2615V1_, AI2619V1_, AI2620V1_, AI2659V1_, AI2659V1_REPA, AI2688V1_, AI2695V1_, AI2774V1_, AI2774V1_REPA, AI2798V1_, AI2798V1_REPA, AI2804V2_, AI2804V2_REPA, AI2936V1_

Type I
ORF Gene Most similar Specificity Name
 
chromosome main
 
6 pseudogene
503 R KpnB54111IIIP (56% identity) TTCANNNNNNTCG Ecl78gORF508BP
10 IS1 ORF2
14 IS1 ORF2
504 125 aa hypothetical protein
505 91 aa hypothetical protein
506 R Ecl78dORF508AP (100% identity) TTCANNNNNNTCG Ecl78gORF508AP
507 S S.KpnB54111III (100% identity) TTCANNNNNNTCG S.Ecl78gORF508P
508 M M.KpnB54111III (100% identity) TTCANNNNNNTCG M.Ecl78gORF508P
509 83 aa hypothetical protein
 
chromosome main
 
501 125 aa hypothetical protein
502 R KpnB54111IIIP (100% identity) TTCANNNNNNTCG Ecl78hORF504P
503 S S.KpnB54111III (100% identity) TTCANNNNNNTCG S.Ecl78hORF504P
504 M M.KpnB54111III (100% identity) TTCANNNNNNTCG M.Ecl78hORF504P
505 83 aa hypothetical protein
 
chromosome main
 
503 125 aa hypothetical protein
504 R KpnB54111IIIP (100% identity) TTCANNNNNNTCG Ecl78fORF506P
505 S S.KpnB54111III (100% identity) TTCANNNNNNTCG S.Ecl78fORF506P
506 M M.KpnB54111III (100% identity) TTCANNNNNNTCG M.Ecl78fORF506P
507 83 aa hypothetical protein
 
chromosome main
 
503 125 aa hypothetical protein
504 R KpnB54111IIIP (100% identity) TTCANNNNNNTCG Ecl78bORF506P
505 S S.KpnB54111III (100% identity) TTCANNNNNNTCG S.Ecl78bORF506P
506 M M.KpnB54111III (100% identity) TTCANNNNNNTCG M.Ecl78bORF506P
507 83 aa hypothetical protein
 
chromosome main
 
11 pseudogene
559 R KpnB54111IIIP (100% identity) TTCANNNNNNTCG Ecl78aORF561P
560 S S.KpnB54111III (100% identity) TTCANNNNNNTCG S.Ecl78aORF561P
561 M M.KpnB54111III (100% identity) TTCANNNNNNTCG M.Ecl78aORF561P
562 83 aa hypothetical protein
 
chromosome main
 
7 pseudogene
504 R KpnB54111IIIP (100% identity) TTCANNNNNNTCG Ecl78cORF506P
505 S S.KpnB54111III (100% identity) TTCANNNNNNTCG S.Ecl78cORF506P
506 M M.KpnB54111III (100% identity) TTCANNNNNNTCG M.Ecl78cORF506P
507 83 aa hypothetical protein
 
chromosome main
 
6 pseudogene
503 R KpnB54111IIIP (56% identity) TTCANNNNNNTCG Ecl78dORF508BP
10 IS1 ORF2
14 IS1 ORF2
504 125 aa hypothetical protein
505 91 aa hypothetical protein
506 R Ecl78gORF508AP (100% identity) TTCANNNNNNTCG Ecl78dORF508AP
507 S S.KpnB54111III (100% identity) TTCANNNNNNTCG S.Ecl78dORF508P
508 M M.KpnB54111III (100% identity) TTCANNNNNNTCG M.Ecl78dORF508P
509 83 aa hypothetical protein
 
chromosome main
 
558 125 aa hypothetical protein
559 R KpnB54111IIIP (100% identity) TTCANNNNNNTCG Ecl78ORF561P
560 S S.KpnB54111III (100% identity) TTCANNNNNNTCG S.Ecl78ORF561P
561 M M.KpnB54111III (100% identity) TTCANNNNNNTCG M.Ecl78ORF561P
562 83 aa hypothetical protein
 
chromosome main
 
504 125 aa hypothetical protein
505 R KpnB54111IIIP (100% identity) TTCANNNNNNTCG Ecl78ORF507P
506 S S.KpnB54111III (100% identity) TTCANNNNNNTCG S.Ecl78ORF507P
507 M M.KpnB54111III (99% identity) TTCANNNNNNTCG M.Ecl78ORF507P
508 83 aa hypothetical protein
 
chromosome main
 
504 125 aa hypothetical protein
505 R KpnB54111IIIP (100% identity) TTCANNNNNNTCG Ecl78eORF507P
506 S S.KpnB54111III (100% identity) TTCANNNNNNTCG S.Ecl78eORF507P
507 M M.KpnB54111III (100% identity) TTCANNNNNNTCG M.Ecl78eORF507P
508 83 aa hypothetical protein
Type II
ORF Gene Most similar Specificity Name
 
chromosome main
 
2083 137 aa hypothetical protein
2084 R EspDR25ORFDP (100% identity) GCCGGC Ecl78eORF2085P
2085 M M.EspDR25ORFDP (100% identity) GCCGGC M.Ecl78eORF2085P
2086 Methyl-accepting chemotaxis protein III
 
2570 inner membrane transporter YedA
2571 V V.EspDR25DcmP (75% identity) V.Ecl78eDcmP
2572 M M.EspDR25DcmP (98% identity) CCWGG M.Ecl78eDcmP
2573 233 aa hypothetical protein
 
3598 802 aa hypothetical protein
3599 M M.Eho34192ORF19010P (100% identity) M.Ecl78eORF3599P
3600 75 aa hypothetical protein
 
3881 Ribulose-phosphate 3-epimerase
3882 M M.EspDR25ORFIP (100% identity) GATC M.Ecl78eDamP
3883 Cell division protein DamX
 
chromosome main
 
517 68 aa hypothetical protein
518 R EspDR25ORFFP (100% identity) Ecl78gORF518P
519 Endoribonuclease SymE
 
2143 137 aa hypothetical protein
2144 R EspDR25ORFDP (100% identity) GCCGGC Ecl78gORF2145P
2145 M M.EspDR25ORFDP (100% identity) GCCGGC M.Ecl78gORF2145P
2146 69 aa hypothetical protein
 
2631 inner membrane transporter YedA
2632 V V.EspDR25DcmP (75% identity) V.Ecl78gDcmP
2633 M M.EspDR25DcmP (98% identity) CCWGG M.Ecl78gDcmP
2634 233 aa hypothetical protein
 
2979 75 aa hypothetical protein
2980 M M.Ecl78dORF2976P (100% identity) M.Ecl78gORF2980P
2981 164 aa hypothetical protein
 
chromosome main
 
513 68 aa hypothetical protein
514 R EspDR25ORFFP (100% identity) Ecl78hORF514P
515 Endoribonuclease SymE
 
2082 137 aa hypothetical protein
2083 R EspDR25ORFDP (100% identity) GCCGGC Ecl78hORF2084P
2084 M M.EspDR25ORFDP (100% identity) GCCGGC M.Ecl78hORF2084P
2085 Methyl-accepting chemotaxis protein III
 
2567 inner membrane transporter YedA
2568 V V.EspDR25DcmP (75% identity) V.Ecl78hDcmP
2569 M M.EspDR25DcmP (98% identity) CCWGG M.Ecl78hDcmP
2570 233 aa hypothetical protein
 
3533 188 aa hypothetical protein
3534 M M.EhoEH1ORF4335P (100% identity) M.Ecl78hORF3534P
3535 177 aa hypothetical protein
 
3642 802 aa hypothetical protein
3643 M M.Eho34192ORF19010P (100% identity) M.Ecl78hORF3643P
3644 75 aa hypothetical protein
 
3706 188 aa hypothetical protein
3707 M M.EhoEH1ORF4335P (100% identity) M.Ecl78hORF3707P
3708 177 aa hypothetical protein
 
chromosome main
 
515 68 aa hypothetical protein
516 R EspDR25ORFFP (100% identity) Ecl78fORF516P
517 Endoribonuclease SymE
 
2108 137 aa hypothetical protein
2109 R EspDR25ORFDP (100% identity) GCCGGC Ecl78fORF2110P
2110 M M.EspDR25ORFDP (100% identity) GCCGGC M.Ecl78fORF2110P
2111 Methyl-accepting chemotaxis protein III
 
2593 inner membrane transporter YedA
2594 V V.EspDR25DcmP (75% identity) V.Ecl78fDcmP
2595 M M.EspDR25DcmP (98% identity) CCWGG M.Ecl78fDcmP
2596 233 aa hypothetical protein
 
3621 802 aa hypothetical protein
3622 M M.Eho34192ORF19010P (100% identity) M.Ecl78fORF3622P
3623 75 aa hypothetical protein
 
chromosome main
 
2093 137 aa hypothetical protein
2094 R EspDR25ORFDP (100% identity) GCCGGC Ecl78bORF2095P
2095 M M.EspDR25ORFDP (100% identity) GCCGGC M.Ecl78bORF2095P
2096 Methyl-accepting chemotaxis protein III
 
2580 inner membrane transporter YedA
2581 V V.EspDR25DcmP (75% identity) V.Ecl78bDcmP
2582 M M.EspDR25DcmP (98% identity) CCWGG M.Ecl78bDcmP
2583 233 aa hypothetical protein
 
2762 182 aa hypothetical protein
2763 M M.Eho492ORF6065P (100% identity) M.Ecl78bORF2763P
2764 88 aa hypothetical protein
 
2997 75 aa hypothetical protein
2998 M M.EhoNO69ORF29590P (100% identity) M.Ecl78bORF2998P
2999 164 aa hypothetical protein
 
3726 802 aa hypothetical protein
3727 M M.Eho34192ORF19010P (100% identity) M.Ecl78bORF3727P
3728 75 aa hypothetical protein
 
4009 Ribulose-phosphate 3-epimerase
4010 M M.EspDR25ORFIP (100% identity) GATC M.Ecl78bDamP
4011 Cell division protein DamX
 
chromosome main
 
2138 137 aa hypothetical protein
2139 R Ecl78ORF2106P (100% identity) GCCGGC Ecl78aORF2140P
2140 M M.EspDR25ORFDP (100% identity) GCCGGC M.Ecl78aORF2140P
2141 69 aa hypothetical protein
 
2626 inner membrane transporter YedA
2627 V V.EspDR25DcmP (75% identity) V.Ecl78aDcmP
2628 M M.EspDR25DcmP (98% identity) CCWGG M.Ecl78aDcmP
2629 233 aa hypothetical protein
 
3025 75 aa hypothetical protein
3026 M M.EhoNO69ORF29590P (100% identity) M.Ecl78aORF3026P
3027 164 aa hypothetical protein
 
3854 802 aa hypothetical protein
3855 M M.Eho34192ORF19010P (100% identity) M.Ecl78aORF3855P
3856 75 aa hypothetical protein
 
4138 Ribulose-phosphate 3-epimerase
4139 M M.EspDR25ORFIP (100% identity) GATC M.Ecl78aDamP
4140 Cell division protein DamX
 
chromosome main
 
1639 91 aa hypothetical protein
1640 M M.Eho333ORF7855P (100% identity) M.Ecl78cORF1640P
1641 116 aa hypothetical protein
 
1947 198 aa hypothetical protein
1948 M M.EspDR25ORFLP (100% identity) M.Ecl78cORF1948P
1949 55 aa hypothetical protein
 
2218 137 aa hypothetical protein
2219 R EspDR25ORFDP (100% identity) GCCGGC Ecl78cORF2220P
2220 M M.EspDR25ORFDP (100% identity) GCCGGC M.Ecl78cORF2220P
2221 Methyl-accepting chemotaxis protein III
 
2706 inner membrane transporter YedA
2707 V V.EspDR25DcmP (75% identity) V.Ecl78cDcmP
2708 M M.EspDR25DcmP (98% identity) CCWGG M.Ecl78cDcmP
2709 233 aa hypothetical protein
 
3062 75 aa hypothetical protein
3063 M M.EhoNO69ORF29590P (100% identity) M.Ecl78cORF3063P
3064 164 aa hypothetical protein
 
3108 146 aa hypothetical protein
3109 M M.Ecl365ORF2379P (100% identity) M.Ecl78cORF3109P
3110 190 aa hypothetical protein
 
3891 802 aa hypothetical protein
3892 M M.Eho34192ORF19010P (100% identity) M.Ecl78cORF3892P
3893 75 aa hypothetical protein
 
4174 Ribulose-phosphate 3-epimerase
4175 M M.EspDR25ORFIP (100% identity) GATC M.Ecl78cDamP
4176 Cell division protein DamX
 
chromosome main
 
2143 137 aa hypothetical protein
2144 R EspDR25ORFDP (100% identity) GCCGGC Ecl78dORF2145P
2145 M M.EspDR25ORFDP (100% identity) GCCGGC M.Ecl78dORF2145P
2146 Methyl-accepting chemotaxis protein III
 
2627 inner membrane transporter YedA
2628 V V.EspDR25DcmP (75% identity) V.Ecl78dDcmP
2629 M M.EspDR25DcmP (98% identity) CCWGG M.Ecl78dDcmP
2630 233 aa hypothetical protein
 
2975 75 aa hypothetical protein
2976 M M.Ecl78gORF2980P (100% identity) M.Ecl78dORF2976P
2977 164 aa hypothetical protein
 
3948 Ribulose-phosphate 3-epimerase
3949 M M.EspDR25ORFIP (100% identity) GATC M.Ecl78dDamP
3950 Cell division protein DamX
 
chromosome main
 
854 76 aa hypothetical protein
855 M M.EspDR25ORFMP (100% identity) M.Ecl78ORF4855P
856 280 aa hypothetical protein
 
2274 137 aa hypothetical protein
2275 R Ecl78aORF2140P (100% identity) GCCGGC Ecl78ORF2106P
2276 M M.EspDR25ORFDP (100% identity) GCCGGC M.Ecl78ORF2106P
2277 Methyl-accepting chemotaxis protein III
 
2760 inner membrane transporter YedA
2761 V V.EspDR25DcmP (75% identity) V.Ecl78DcmP
2762 M M.EspDR25DcmP (98% identity) CCWGG M.Ecl78DcmP
2763 233 aa hypothetical protein
 
3159 75 aa hypothetical protein
3160 M M.EhoNO69ORF29590P (100% identity) M.Ecl78ORF3055P
3161 164 aa hypothetical protein
 
3887 802 aa hypothetical protein
3888 M M.Eho34192ORF19010P (100% identity) M.Ecl78ORF3888P
3889 75 aa hypothetical protein
 
4170 Ribulose-phosphate 3-epimerase
4171 M M.EspDR25ORFIP (100% identity) GATC M.Ecl78DamP
4172 Cell division protein DamX
 
chromosome main
 
2104 137 aa hypothetical protein
2105 R Ecl78aORF2140P (100% identity) GCCGGC Ecl78ORF2106P
2106 M M.EspDR25ORFDP (100% identity) GCCGGC M.Ecl78ORF2106P
2107 69 aa hypothetical protein
 
2603 116 aa hypothetical protein
2604 M M.Eho333ORF7855P (100% identity) M.Ecl78ORF2604P
2605 91 aa hypothetical protein
 
2699 inner membrane transporter YedA
2700 V V.EspDR25DcmP (75% identity) V.Ecl78DcmP
2701 M M.EspDR25DcmP (98% identity) CCWGG M.Ecl78DcmP
2702 233 aa hypothetical protein
 
3054 75 aa hypothetical protein
3055 M M.EhoNO69ORF29590P (100% identity) M.Ecl78ORF3055P
3056 164 aa hypothetical protein
 
3785 62 aa hypothetical protein
3786 M M.EspDR25ORFGP (84% identity) M.Ecl78ORF3786P
3787 767 aa hypothetical protein
 
3787 767 aa hypothetical protein
3788 M M.EspDR25ORFEP (100% identity) M.Ecl78ORF3788P
3789 75 aa hypothetical protein
 
4073 Ribulose-phosphate 3-epimerase
4074 M M.EspDR25ORFIP (100% identity) GATC M.Ecl78DamP
4075 Cell division protein DamX
 
plasmid P1
 
4538 55 aa hypothetical protein
4539 M M.YpsF1ORFCP (100% identity) CCWGG M.Ecl78gORF4539P
4540 Endonuclease YhcR
 
4647 106 aa hypothetical protein
4648 M M.Ssp15303ORFDP (100% identity) M.Ecl78gORF4648P
4649 Polyamine aminopropyltransferase
 
4675 387 aa hypothetical protein
4676 M M.Ssp15303ORFEP (95% identity) M.Ecl78gORF4676P
4677 283 aa hypothetical protein
 
plasmid P1
 
4353 76 aa hypothetical protein
4354 M M.EspDR25ORFMP (100% identity) M.Ecl78eORF4354P
4355 280 aa hypothetical protein
 
plasmid P1
 
4376 Tyrosine recombinase XerD
??? R VchG4222ORF7400P (21% identity) R2.Ecl78hORF24P
4377 118 aa hypothetical protein
 
4457 76 aa hypothetical protein
4458 M M.EspDR25ORFMP (100% identity) M.Ecl78hORF4458P
4459 280 aa hypothetical protein
 
plasmid P1
 
4680 55 aa hypothetical protein
4681 M M.YpsF1ORFCP (100% identity) CCWGG M.Ecl78ORF4594P
4682 Endonuclease YhcR
 
4789 106 aa hypothetical protein
4790 M M.Ssp15303ORFDP (100% identity) M.Ecl78ORF4703P
4791 Polyamine aminopropyltransferase
 
4816 387 aa hypothetical protein
4817 M M.Ssp15303ORFEP (95% identity) M.Ecl78ORF4817P
4818 283 aa hypothetical protein
 
plasmid P1
 
4494 76 aa hypothetical protein
4495 M M.EspDR25ORFMP (100% identity) M.Ecl78bORF4495P
4496 280 aa hypothetical protein
 
plasmid P1
 
4593 55 aa hypothetical protein
4594 M M.YpsF1ORFCP (100% identity) CCWGG M.Ecl78ORF4594P
4595 Endonuclease YhcR
 
4702 106 aa hypothetical protein
4703 M M.Ssp15303ORFDP (100% identity) M.Ecl78ORF4703P
4704 Polyamine aminopropyltransferase
 
4730 387 aa hypothetical protein
??? M M2.SmapR478ORF298P (100% identity) M.Ecl78ORF4731P
4732 283 aa hypothetical protein
 
plasmid P1
 
4655 76 aa hypothetical protein
4656 M M.EspDR25ORFMP (100% identity) M.Ecl78cORF4656P
4657 280 aa hypothetical protein
 
plasmid P1
 
4534 55 aa hypothetical protein
4535 M M.YpsF1ORFCP (100% identity) CCWGG M.Ecl78dORF4535P
4536 Endonuclease YhcR
 
4643 106 aa hypothetical protein
4644 M M.Ssp15303ORFDP (100% identity) M.Ecl78dORF4644P
4645 Polyamine aminopropyltransferase
 
4671 387 aa hypothetical protein
4672 M M.Ssp15303ORFEP (95% identity) M.Ecl78dORF4672P
4673 283 aa hypothetical protein
 
plasmid P1
 
4757 106 aa hypothetical protein
4758 M M.Ssp15303ORFDP (100% identity) M.Ecl78aORF4758P
4759 Polyamine aminopropyltransferase
 
4785 387 aa hypothetical protein
4786 M M.Ssp15303ORFEP (95% identity) M.Ecl78aORF4786P
4787 283 aa hypothetical protein
 
plasmid P1
 
4387 76 aa hypothetical protein
4388 M M.EspDR25ORFMP (100% identity) M.Ecl78fORF4388P
4389 280 aa hypothetical protein
 
plasmid P2
 
4854 76 aa hypothetical protein
4855 M M.EspDR25ORFMP (100% identity) M.Ecl78ORF4855P
4856 280 aa hypothetical protein
 
plasmid P2
 
4798 76 aa hypothetical protein
4799 M M.EspDR25ORFMP (100% identity) M.Ecl78dORF4799P
4800 280 aa hypothetical protein
 
plasmid P2
 
4645 99 aa hypothetical protein
4646 M M.Sma0cORF5065P (100% identity) CCNGG M.Ecl78bORF4646P
4647 100 aa hypothetical protein
 
plasmid P2
 
4909 76 aa hypothetical protein
4910 M M.EspDR25ORFMP (100% identity) M.Ecl78aORF4910P
4911 280 aa hypothetical protein
 
plasmid P2
 
4718 155 aa hypothetical protein
4719 M M.YreW13ORF24350P (100% identity) M.Ecl78cORF4719P
4720 73 aa hypothetical protein
 
plasmid P2
 
4721 88 aa hypothetical protein
4722 M M.YpsR2ORFAP (100% identity) CCWGG M.Ecl78gORF4722P
4723 R YpsR1ORFAP (100% identity) CCWGG Ecl78gORF4722P
90 293 aa hypothetical protein CJD35_20465
 
4752 155 aa hypothetical protein
4753 M M.Ero695ORF23565P (100% identity) M.Ecl78gORF4753P
4754 73 aa hypothetical protein
 
plasmid P2
 
4450 155 aa hypothetical protein
4451 M M.YreW13ORF24350P (100% identity) M.Ecl78fORF4451P
4452 73 aa hypothetical protein
 
plasmid P3
 
4971 155 aa hypothetical protein
4972 M M.YreW13ORF24350P (100% identity) M.Ecl78aORF4972P
4973 73 aa hypothetical protein
 
plasmid P3
 
5031 76 aa hypothetical protein
5032 M M.EspDR25ORFMP (100% identity) M.Ecl78gORF5032P
5033 280 aa hypothetical protein
 
plasmid P3
 
4642 SOS response-associated peptidase YedK
4643 M M.RorCRE01ORF21130P (100% identity) M.Ecl78hORF4643P
4644 82 aa hypothetical protein
 
plasmid P3
 
4939 155 aa hypothetical protein
4940 M M.EspP2ORFAP (98% identity) M.Ecl78ORF4940P
4941 73 aa hypothetical protein
 
plasmid P5
 
5139 75 aa hypothetical protein
5140 M M.Ecl53EVAORFCP (89% identity) M.Ecl78ORF5140P
5141 101 aa hypothetical protein
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