Escherichia coli isolate 131 |
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Putative Escherichia coli isolate 131 RM systems
Ref: Alioto,T. et al. unpublished
REBASE ref # 33419
| Sequence length: | GenBank #: | |
| chromosome main: | 5,212,580 bp | OW968277 |
| chromosome main: | 5,186,323 bp | OW849064 |
| chromosome main: | 5,070,006 bp | OX030701 |
| chromosome main: | 5,039,657 bp | OW848785 |
| plasmid P1: | 128,607 bp | OW968278 |
| plasmid P1: | 146,311 bp | OW849065 |
| plasmid P1: | 109,001 bp | OW848786 |
| plasmid P1: | 90,741 bp | OX030702 |
| plasmid P2: | 88,990 bp | OX030703 |
REBASE acronym:
Org_num:
All begin AI2598V1_, AI2598V1_REPA, AI2721V1_, AI2721V1_REPA, AI2949V1_, AI2949V1_REPA, AI2951V1_, AI2951V1_REPA
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome main | ||||
| 1635 | 260 aa hypothetical protein | |||
| 1636 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | Ecoi131bORF1637P |
| 1637 | M | M.Ecoi131aORF4251P (100% identity) | AAAGNNNNGTT | M.Ecoi131bORF1637P |
| 1638 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.Ecoi131bORF1637P |
| 1639 | 156 aa hypothetical protein | |||
| 1980 | Mrr restriction system protein | |||
| 1981 | M | M.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | M.Ecoi131bORF1981P |
| 1982 | S | S.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | S.Ecoi131bORF1981P |
| 1983 | R | EcosS9ORF3165P (100% identity) | RTACNNNNGTG | Ecoi131bORF1981P |
| 1984 | Toxic protein SymE | |||
| chromosome main | ||||
| 3906 | Toxic protein SymE | |||
| 3907 | R | EcosS9ORF3165P (100% identity) | RTACNNNNGTG | Ecoi131aORF3909P |
| 3908 | S | S.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | S.Ecoi131aORF3909P |
| 3909 | M | M.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | M.Ecoi131aORF3909P |
| 3910 | Mrr restriction system protein | |||
| 4249 | 156 aa hypothetical protein | |||
| 4250 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.Ecoi131aORF4251P |
| 4251 | M | M.Ecoi131bORF1637P (100% identity) | AAAGNNNNGTT | M.Ecoi131aORF4251P |
| 4252 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | Ecoi131aORF4251P |
| 4253 | 260 aa hypothetical protein | |||
| chromosome main | ||||
| 3244 | Toxic protein SymE | |||
| 3245 | R | EcosS9ORF3165P (100% identity) | RTACNNNNGTG | Ecoi131ORF3247P |
| 3246 | S | S.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | S.Ecoi131ORF3247P |
| 3247 | M | M.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | M.Ecoi131ORF3247P |
| 3248 | Mrr restriction system protein | |||
| 3588 | 156 aa hypothetical protein | |||
| 3589 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.Ecoi131ORF3590P |
| 3590 | M | M.Ecoi131bORF1637P (100% identity) | AAAGNNNNGTT | M.Ecoi131ORF3590P |
| 3591 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | Ecoi131ORF3590P |
| 3592 | 260 aa hypothetical protein | |||
| chromosome main | ||||
| 3234 | Toxic protein SymE | |||
| 3235 | R | EcosS9ORF3165P (100% identity) | RTACNNNNGTG | Eco131cORF3237P |
| 3236 | S | S.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | S.Eco131cORF3237P |
| 3237 | M | M.EcosS9ORF3165P (100% identity) | RTACNNNNGTG | M.Eco131cORF3237P |
| 3238 | Mrr restriction system protein | |||
| 3632 | 156 aa hypothetical protein | |||
| 3633 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.Eco131cORF3634P |
| 3634 | M | M.Ecoi131bORF1637P (100% identity) | AAAGNNNNGTT | M.Eco131cORF3634P |
| 3635 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | Eco131cORF3634P |
| 3636 | 260 aa hypothetical protein | |||
| plasmid P2 | ||||
| 240 | IS1 ORF2 | |||
| 4960 | S | S.SenBR076ORFFP (56% identity) | S.Eco131cORF4961P | |
| 4961 | M | M.SenceORFJP (99% identity) | M.Eco131cORF4961P | |
| 4962 | 73 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome main | ||||
| 551 | 65 aa hypothetical protein | |||
| 552 | R | R1.EcosS3ORF2905P (100% identity) | GTCGAC | R1.Ecoi131bORF554P |
| 553 | R | R2.EcosS3ORF2905P (100% identity) | GTCGAC | R2.Ecoi131bORF554P |
| 554 | M | M2.EcosS3ORF2905P (99% identity) | M.Ecoi131bORF554P | |
| 555 | 122 aa hypothetical protein | |||
| 726 | inner membrane transporter YedA | |||
| 727 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Ecoi131bDcmP |
| 728 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Ecoi131bDcmP |
| 729 | 231 aa hypothetical protein | |||
| 970 | HTH-type transcriptional regulator ImmR | |||
| 971 | M | M.KpnYN1ORFGP (89% identity) | M.Ecoi131bORF971P | |
| 972 | 71 aa hypothetical protein | |||
| 2045 | 428 aa hypothetical protein | |||
| 2046 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Ecoi131bORF2047P |
| 2047 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Ecoi131bORF2047P |
| 2048 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Ecoi131bORF2047P |
| 209 | 80 aa hypothetical protein BE964_18980 | |||
| 2299 | 555 aa hypothetical protein | |||
| 2300 | R | EcosS3ORF15775P (98% identity) | Ecoi131bORF2301P | |
| 2301 | M | M.Mxa6833447ORFBP (99% identity) | M.Ecoi131bORF2301P | |
| 2302 | 118 aa hypothetical protein | |||
| 3159 | Cell division protein DamX | |||
| 3160 | M | M.SspPIBDamP (100% identity) | GATC | M.Ecoi131bDamP |
| 3161 | Ribulose-phosphate 3-epimerase | |||
| 3273 | 59 aa hypothetical protein | |||
| 3274 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Ecoi131bORF3274P |
| 3275 | DNA-binding protein Fis | |||
| 4001 | 162 aa hypothetical protein | |||
| 4002 | M | M.SflLIN17ORF17440P (100% identity) | GATC | M.Ecoi131bORF4002P |
| 4003 | LexA repressor | |||
| 4010 | 67 aa hypothetical protein | |||
| 4011 | M | M.EcosR6ORF7985P (100% identity) | M.Ecoi131bORF4011P | |
| 4012 | 71 aa hypothetical protein | |||
| 4039 | 257 aa hypothetical protein | |||
| 4040 | M | M.Sso8033ORF3755P (100% identity) | CCWGG | M.Ecoi131bORF4040P |
| 4041 | R | Sso8033ORF3755P (99% identity) | CCWGG | Ecoi131bORF4040P |
| 4042 | SsrA-binding protein | |||
| 4908 | 65 aa hypothetical protein | |||
| 4909 | M | M.EcosS9ORF10680P (100% identity) | A | M.Ecoi131bORF4909P |
| 4910 | Anti-adapter protein IraM | |||
| chromosome main | ||||
| 73 | 72 aa hypothetical protein | |||
| 74 | M | M.KpnYN1ORFGP (89% identity) | M.Ecoi131aORF74P | |
| 75 | HTH-type transcriptional regulator ImmR | |||
| 513 | 65 aa hypothetical protein | |||
| 514 | M | M.EcosS9ORF10680P (100% identity) | A | M.Ecoi131aORF514P |
| 61 | IS66 family transposase | |||
| 1185 | inner membrane transporter YedA | |||
| 1186 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Ecoi131aDcmP |
| 1187 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Ecoi131aDcmP |
| 1188 | 231 aa hypothetical protein | |||
| 2721 | Ribulose-phosphate 3-epimerase | |||
| 2722 | M | M.SspPIBDamP (100% identity) | GATC | M.Ecoi131aDamP |
| 2723 | Cell division protein DamX | |||
| 3021 | 1213 aa hypothetical protein | |||
| 3022 | RM | EcosR9ORF15335P (100% identity) | CANCATC | Ecoi131aORF3022P |
| 3023 | 865 aa hypothetical protein | |||
| 3439 | 138 aa hypothetical protein | |||
| 3440 | M | M.KaeCRE8ORF15605P (100% identity) | M.Ecoi131aORF3440P | |
| 3441 | 71 aa hypothetical protein | |||
| 143 | 80 aa hypothetical protein BE964_18980 | |||
| 3838 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Ecoi131aORF3838P |
| 3839 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Ecoi131aORF3838P |
| 3840 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Ecoi131aORF3838P |
| 3841 | 428 aa hypothetical protein | |||
| chromosome main | ||||
| 671 | inner membrane transporter YedA | |||
| 672 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Eco131cDcmP |
| 673 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Eco131cDcmP |
| 674 | 231 aa hypothetical protein | |||
| 2052 | DNA-binding protein Fis | |||
| 2053 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.Eco131cORF2053P |
| 2054 | 59 aa hypothetical protein | |||
| 2166 | Ribulose-phosphate 3-epimerase | |||
| 2167 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco131cDamP |
| 2168 | Cell division protein DamX | |||
| 178 | 80 aa hypothetical protein BE964_18980 | |||
| 3168 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Eco131cORF3168P |
| 3169 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Eco131cORF3168P |
| 3170 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Eco131cORF3168P |
| 3171 | 428 aa hypothetical protein | |||
| 3275 | 162 aa hypothetical protein | |||
| 3276 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco131cORF3276P |
| 3277 | LexA repressor | |||
| 3282 | 67 aa hypothetical protein | |||
| 3283 | M | M.Sso63633ORF22290P (100% identity) | M.Eco131cORF3283P | |
| 3284 | 71 aa hypothetical protein | |||
| 4300 | 71 aa hypothetical protein | |||
| 4301 | M | M.KpnYN1ORFGP (89% identity) | M.Eco131cORF4301P | |
| 4302 | HTH-type transcriptional regulator ImmR | |||
| chromosome main | ||||
| 655 | inner membrane transporter YedA | |||
| 656 | V | V.SflC32DcmP (74% identity) | CCWGG | V.Ecoi131DcmP |
| 657 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.Ecoi131DcmP |
| 658 | 231 aa hypothetical protein | |||
| 2136 | Ribulose-phosphate 3-epimerase | |||
| 2137 | M | M.SspPIBDamP (100% identity) | GATC | M.Ecoi131DamP |
| 2138 | Cell division protein DamX | |||
| 124 | 80 aa hypothetical protein BE964_18980 | |||
| 3201 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M1.Ecoi131ORF3201P |
| 3202 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.Ecoi131ORF3201P |
| 3203 | R | EcosS9ORF2810P (100% identity) | GGTCTC | Ecoi131ORF3201P |
| 3204 | 428 aa hypothetical protein | |||
| 4259 | 71 aa hypothetical protein | |||
| 4260 | M | M.KpnYN1ORFGP (89% identity) | M.Ecoi131ORF4260P | |
| 4261 | HTH-type transcriptional regulator ImmR | |||
| 4696 | 65 aa hypothetical protein | |||
| 4697 | M | M.EcosS9ORF10680P (100% identity) | A | M.Ecoi131ORF4697P |
| 4698 | Anti-adapter protein IraM | |||
| plasmid P1 | ||||
| 5034 | 308 aa hypothetical protein | |||
| 5035 | M | M.KpnVA569ORF28145P (100% identity) | M.Ecoi131bORF5035P | |
| 5036 | 73 aa hypothetical protein | |||
| plasmid P1 | ||||
| 193 | 293 aa hypothetical protein CJD35_20465 | |||
| 4910 | R | YpsR1ORFAP (99% identity) | CCWGG | Ecoi131aORF4911P |
| 4911 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.Ecoi131aORF4911P |
| 190 | pseudogene | |||
| 4976 | 308 aa hypothetical protein | |||
| ??? | M | M.Sen8297ORF82P (74% identity) | M.Ecoi131aORF4977P | |
| 4978 | 73 aa hypothetical protein | |||
| plasmid P1 | ||||
| 4788 | 73 aa hypothetical protein | |||
| 4789 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Ecoi131ORF4789P |
| 4790 | 308 aa hypothetical protein | |||
| plasmid P1 | ||||
| 4795 | 308 aa hypothetical protein | |||
| 4796 | M | M.EcopO26ORF90P (99% identity) | M.Eco131cORF4796P | |
| 4797 | 73 aa hypothetical protein | |||
| plasmid P2 | ||||
| 4947 | 73 aa hypothetical protein | |||
| 4948 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.Eco131cORF4948P |
| 4949 | 308 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome main | ||||
| 3840 | 579 aa hypothetical protein | |||
| 3841 | R | EcosS9McrCP (100% identity) | Ecoi131aMcrCP | |
| 3842 | R | EcosS3McrBP (100% identity) | Ecoi131aMcrBP | |
| 3843 | teichuronic acid biosynthesis | |||
| chromosome main | ||||
| 3203 | 579 aa hypothetical protein | |||
| 3204 | R | EcosS9McrCP (100% identity) | Ecoi131McrCP | |
| 3205 | R | EcosS3McrBP (100% identity) | Ecoi131McrBP | |
| 54 | pseudogene | |||
| chromosome main | ||||
| 3170 | 579 aa hypothetical protein | |||
| 3171 | R | EcosS9McrCP (100% identity) | Eco131cMcrCP | |
| 3172 | R | EcosS3McrBP (100% identity) | Eco131cMcrBP | |
| 3173 | teichuronic acid biosynthesis | |||
| 3237 | Type I restriction enzyme EcoKI M protein | |||
| 3238 | R | EcosS9MrrP (99% identity) | Eco131cMrrP | |
| 3239 | 95 aa hypothetical protein | |||