Ref: Alioto,T. et al. unpublished

REBASE ref # 33419

Sequence length:GenBank #:
chromosome main: 5,241,185 bp OW969857
chromosome main: 5,241,159 bp OW849536
chromosome main: 5,190,356 bp OW848995
chromosome main: 5,239,835 bp OW968453
chromosome main: 5,244,904 bp OW968193
chromosome main: 5,239,836 bp OW968244
chromosome main: 5,237,949 bp OW968209
chromosome main: 5,236,992 bp OW970220
plasmid P1: 307,302 bp OW970221
plasmid P1: 343,925 bp OW968194
plasmid P1: 278,362 bp OW968210
plasmid P1: 307,418 bp OW968245
plasmid P1: 289,840 bp OW848996
plasmid P1: 301,001 bp OW849537
plasmid P1: 307,418 bp OW968454
plasmid P1: 306,150 bp OW969858
plasmid P2: 215,849 bp OW968246
plasmid P2: 213,717 bp OW969859
plasmid P2: 216,157 bp OW970222
plasmid P2: 214,016 bp OW849538
plasmid P2: 214,782 bp OW968455
plasmid P2: 214,783 bp OW848997
plasmid P3: 42,118 bp OW848998
plasmid P3: 71,841 bp OW968247
plasmid P3: 77,488 bp OW968456
plasmid P3: 77,266 bp OW970223

REBASE acronym:

Org_num:

 

All begin AI2700V1_, AI2717V1_, AI2717V1_REPA, AI2979V1_, AI2979V1_REPA, AI2980V2_, AI2982V1_, AI2982V1_REPA, AI2985V1_, AI2985V1_REPA, AI3056V1_, AI3056V1_REPA, AI3060V5_

Type I
ORF Gene Most similar Specificity Name
 
chromosome main
 
4007 190 aa hypothetical protein
4008 M M.Kpn1961gORF4010P (100% identity) CATCNNNNNNTTYG M.Kpn1961dORF4008P
4009 S S1.Kpnu34ORF4855P (100% identity) CATCNNNNNNTTYG S.Kpn1961dORF4008P
4010 R Kpnu34ORF4855P (100% identity) CATCNNNNNNTTYG Kpn1961dORF4008P
4011 615 aa hypothetical protein
 
??? S S.Ksp1954ORF11460P (100% identity) ACANNNNNNNNTGAC S.Kpn1961dORF4269P
4269 M M.Ksp1954ORF11460P (100% identity) ACANNNNNNNNTGAC M.Kpn1961dORF4269P
4270 R Ksp1954ORF11460P (100% identity) ACANNNNNNNNTGAC Kpn1961dORF4269P
4271 Prophage integrase IntA
 
chromosome main
 
3962 190 aa hypothetical protein
3963 M M.Kpn1961gORF4010P (100% identity) CATCNNNNNNTTYG M.Kpn1961aORF3963P
3964 S S1.Kpnu34ORF4855P (100% identity) CATCNNNNNNTTYG S.Kpn1961aORF3963P
3965 R Kpnu34ORF4855P (100% identity) CATCNNNNNNTTYG Kpn1961aORF3963P
3966 615 aa hypothetical protein
 
??? S S.Ksp1954ORF11460P (100% identity) ACANNNNNNNNTGAC S.Kpn1961aORF4224P
4224 M M.Ksp1954ORF11460P (100% identity) ACANNNNNNNNTGAC M.Kpn1961aORF4224P
4225 R Ksp1954ORF11460P (100% identity) ACANNNNNNNNTGAC Kpn1961aORF4224P
4226 Prophage integrase IntA
 
chromosome main
 
4007 190 aa hypothetical protein
4008 M M.Kpn1961gORF4010P (100% identity) CATCNNNNNNTTYG M.Kpn1961eORF4008P
4009 S S1.Kpnu34ORF4855P (100% identity) CATCNNNNNNTTYG S.Kpn1961eORF4008P
4010 R Kpnu34ORF4855P (100% identity) CATCNNNNNNTTYG Kpn1961eORF4008P
4011 615 aa hypothetical protein
 
??? S S.Ksp1954ORF11460P (100% identity) ACANNNNNNNNTGAC S.Kpn1961eORF4269P
4269 M M.Ksp1954ORF11460P (100% identity) ACANNNNNNNNTGAC M.Kpn1961eORF4269P
4270 R Ksp1954ORF11460P (100% identity) ACANNNNNNNNTGAC Kpn1961eORF4269P
4271 Prophage integrase IntA
 
chromosome main
 
4007 190 aa hypothetical protein
4008 M M.Kpn1961gORF4010P (100% identity) CATCNNNNNNTTYG M.Kpn1961ORF4008P
4009 S S1.Kpnu34ORF4855P (100% identity) CATCNNNNNNTTYG S.Kpn1961ORF4008P
4010 R Kpnu34ORF4855P (100% identity) CATCNNNNNNTTYG Kpn1961ORF4008P
4011 615 aa hypothetical protein
 
??? S S.Ksp1954ORF11460P (100% identity) ACANNNNNNNNTGAC S.Kpn1961ORF4269P
4269 M M.Ksp1954ORF11460P (100% identity) ACANNNNNNNNTGAC M.Kpn1961ORF4269P
4270 R Ksp1954ORF11460P (100% identity) ACANNNNNNNNTGAC Kpn1961ORF4269P
4271 Prophage integrase IntA
 
chromosome main
 
4008 190 aa hypothetical protein
4009 M M.Kpn1961gORF4010P (100% identity) CATCNNNNNNTTYG M.Kpn1961fORF4009P
4010 S S1.Kpnu34ORF4855P (100% identity) CATCNNNNNNTTYG S.Kpn1961fORF4009P
4011 R Kpnu34ORF4855P (100% identity) CATCNNNNNNTTYG Kpn1961fORF4009P
4012 615 aa hypothetical protein
 
??? S S.Ksp1954ORF11460P (100% identity) ACANNNNNNNNTGAC S.Kpn1961fORF4270P
4270 M M.Ksp1954ORF11460P (100% identity) ACANNNNNNNNTGAC M.Kpn1961fORF4270P
4271 R Ksp1954ORF11460P (100% identity) ACANNNNNNNNTGAC Kpn1961fORF4270P
4272 Prophage integrase IntA
 
chromosome main
 
4009 190 aa hypothetical protein
4010 M M.Kpn1961gORF4010P (100% identity) CATCNNNNNNTTYG M.Kpn1961cORF4010P
4011 S S1.Kpnu34ORF4855P (100% identity) CATCNNNNNNTTYG S.Kpn1961cORF4010P
4012 R Kpnu34ORF4855P (100% identity) CATCNNNNNNTTYG Kpn1961cORF4010P
4013 615 aa hypothetical protein
 
??? S S.Ksp1954ORF11460P (100% identity) ACANNNNNNNNTGAC S.Kpn1961cORF4271P
4271 M M.Ksp1954ORF11460P (100% identity) ACANNNNNNNNTGAC M.Kpn1961cORF4271P
4272 R Ksp1954ORF11460P (100% identity) ACANNNNNNNNTGAC Kpn1961cORF4271P
4273 Prophage integrase IntA
 
chromosome main
 
4009 190 aa hypothetical protein
4010 M M.Kpn1961fORF4009P (100% identity) CATCNNNNNNTTYG M.Kpn1961gORF4010P
4011 S S1.Kpnu34ORF4855P (100% identity) CATCNNNNNNTTYG S.Kpn1961gORF4010P
4012 R Kpnu34ORF4855P (100% identity) CATCNNNNNNTTYG Kpn1961gORF4010P
4013 615 aa hypothetical protein
 
??? S S.Ksp1954ORF11460P (100% identity) ACANNNNNNNNTGAC S.Kpn1961gORF4271P
4271 M M.Ksp1954ORF11460P (100% identity) ACANNNNNNNNTGAC M.Kpn1961gORF4271P
4272 R Ksp1954ORF11460P (100% identity) ACANNNNNNNNTGAC Kpn1961gORF4271P
4273 Prophage integrase IntA
 
chromosome main
 
4011 190 aa hypothetical protein
4012 M M.Kpn1961gORF4010P (100% identity) CATCNNNNNNTTYG M.Kpn1961bORF4012P
4013 S S1.Kpnu34ORF4855P (100% identity) CATCNNNNNNTTYG S.Kpn1961bORF4012P
4014 R Kpnu34ORF4855P (100% identity) CATCNNNNNNTTYG Kpn1961bORF4012P
4015 615 aa hypothetical protein
 
??? S S.Ksp1954ORF11460P (100% identity) ACANNNNNNNNTGAC S.Kpn1961bORF4273P
4273 M M.Ksp1954ORF11460P (100% identity) ACANNNNNNNNTGAC M.Kpn1961bORF4273P
4274 R Ksp1954ORF11460P (72% identity) ACANNNNNNNNTGAC Kpn1961bORF4273BP
18 pseudogene
4275 334 aa hypothetical protein
4276 R Ksp1954ORF11460P (27% identity) ACANNNNNNNNTGAC Kpn1961bORF4273AP
4277 Prophage integrase IntA
 
plasmid P1
 
4870 71 aa hypothetical protein
4871 R KpnyORFJP (100% identity) TCANNNNNNRTAYC Kpn1961bORF4875P
4872 285 aa hypothetical protein
4873 165 aa hypothetical protein
4874 S S.KpnPE16ORFDP (100% identity) TCANNNNNNRTAYC S.Kpn1961bORF4875P
4875 M M.KquFF28ORF25680P (100% identity) TCANNNNNNRTAYC M.Kpn1961bORF4875P
4876 621 aa hypothetical protein
 
plasmid P2
 
5229 71 aa hypothetical protein
5230 R KpnyORFJP (100% identity) TCANNNNNNRTAYC Kpn1961fORF5234P
5231 285 aa hypothetical protein
5232 165 aa hypothetical protein
5233 S S.KpnPE16ORFDP (100% identity) TCANNNNNNRTAYC S.Kpn1961fORF5234P
5234 M M.KquFF28ORF25680P (100% identity) TCANNNNNNRTAYC M.Kpn1961fORF5234P
5235 621 aa hypothetical protein
 
plasmid P2
 
5233 71 aa hypothetical protein
5234 R KpnyORFJP (100% identity) TCANNNNNNRTAYC Kpn1961eORF5238P
5235 285 aa hypothetical protein
5236 165 aa hypothetical protein
5237 S S.KpnPE16ORFDP (100% identity) TCANNNNNNRTAYC S.Kpn1961eORF5238P
5238 M M.KquFF28ORF25680P (100% identity) TCANNNNNNRTAYC M.Kpn1961eORF5238P
5239 621 aa hypothetical protein
 
plasmid P2
 
5229 71 aa hypothetical protein
5230 R KpnyORFJP (100% identity) TCANNNNNNRTAYC Kpn1961dORF5234P
5231 285 aa hypothetical protein
5232 165 aa hypothetical protein
5233 S S.KpnPE16ORFDP (100% identity) TCANNNNNNRTAYC S.Kpn1961dORF5234P
5234 M M.KquFF28ORF25680P (100% identity) TCANNNNNNRTAYC M.Kpn1961dORF5234P
5235 621 aa hypothetical protein
 
plasmid P2
 
5167 71 aa hypothetical protein
5168 R KpnyORFJP (100% identity) TCANNNNNNRTAYC Kpn1961aORF5172P
5169 285 aa hypothetical protein
5170 165 aa hypothetical protein
5171 S S.KpnPE16ORFDP (100% identity) TCANNNNNNRTAYC S.Kpn1961aORF5172P
5172 M M.KquFF28ORF25680P (100% identity) TCANNNNNNRTAYC M.Kpn1961aORF5172P
5173 621 aa hypothetical protein
 
plasmid P2
 
5225 71 aa hypothetical protein
5226 R KpnyORFJP (100% identity) TCANNNNNNRTAYC Kpn1961ORF5230P
5227 285 aa hypothetical protein
5228 165 aa hypothetical protein
5229 S S.KpnPE16ORFDP (100% identity) TCANNNNNNRTAYC S.Kpn1961ORF5230P
5230 M M.KquFF28ORF25680P (100% identity) TCANNNNNNRTAYC M.Kpn1961ORF5230P
5231 621 aa hypothetical protein
 
plasmid P2
 
5234 71 aa hypothetical protein
5235 R KpnyORFJP (100% identity) TCANNNNNNRTAYC Kpn1961gORF5239P
5236 285 aa hypothetical protein
5237 165 aa hypothetical protein
5238 S S.KpnPE16ORFDP (100% identity) TCANNNNNNRTAYC S.Kpn1961gORF5239P
5239 M M.KquFF28ORF25680P (100% identity) TCANNNNNNRTAYC M.Kpn1961gORF5239P
5240 621 aa hypothetical protein
Type II
ORF Gene Most similar Specificity Name
 
chromosome main
 
349 Cell division protein DamX
350 M M.KspC31DamP (100% identity) GATC M.Kpn1961fDamP
351 Ribulose-phosphate 3-epimerase
 
2937 inner membrane transporter YedA
2938 V V.KspC31DcmP (75% identity) V.Kpn1961fDcmP
2939 M M.Ksp1954ORF23690P (97% identity) CCWGG M.Kpn1961fDcmP
2940 235 aa hypothetical protein
 
3475 804 aa hypothetical protein
3476 M M.Kpnu34ORF7640P (100% identity) GATC M.Kpn1961fORF3476P
3477 75 aa hypothetical protein
 
chromosome main
 
349 Cell division protein DamX
350 M M.KspC31DamP (100% identity) GATC M.Kpn1961DamP
351 Ribulose-phosphate 3-epimerase
 
2935 inner membrane transporter YedA
2936 V V.KspC31DcmP (75% identity) V.Kpn1961DcmP
2937 M M.Ksp1954ORF23690P (97% identity) CCWGG M.Kpn1961DcmP
2938 235 aa hypothetical protein
 
chromosome main
 
349 Cell division protein DamX
350 M M.KspC31DamP (100% identity) GATC M.Kpn1961aDamP
351 Ribulose-phosphate 3-epimerase
 
2891 inner membrane transporter YedA
2892 V V.KspC31DcmP (75% identity) V.Kpn1961aDcmP
2893 M M.Ksp1954ORF23690P (97% identity) CCWGG M.Kpn1961aDcmP
2894 235 aa hypothetical protein
 
chromosome main
 
349 Cell division protein DamX
350 M M.KspC31DamP (100% identity) GATC M.Kpn1961dDamP
351 Ribulose-phosphate 3-epimerase
 
2936 inner membrane transporter YedA
2937 V V.KspC31DcmP (75% identity) V.Kpn1961dDcmP
2938 M M.Ksp1954ORF23690P (97% identity) CCWGG M.Kpn1961dDcmP
2939 235 aa hypothetical protein
 
3474 804 aa hypothetical protein
3475 M M.Kpnu34ORF7640P (100% identity) GATC M.Kpn1961dORF3475P
3476 75 aa hypothetical protein
 
chromosome main
 
349 Cell division protein DamX
350 M M.KspC31DamP (100% identity) GATC M.Kpn1961eDamP
351 Ribulose-phosphate 3-epimerase
 
2937 inner membrane transporter YedA
2938 V V.KspC31DcmP (75% identity) V.Kpn1961eDcmP
2939 M M.Ksp1954ORF23690P (97% identity) CCWGG M.Kpn1961eDcmP
2940 235 aa hypothetical protein
 
3474 804 aa hypothetical protein
3475 M M.Kpnu34ORF7640P (100% identity) GATC M.Kpn1961eORF3475P
3476 75 aa hypothetical protein
 
chromosome main
 
349 Cell division protein DamX
350 M M.KspC31DamP (100% identity) GATC M.Kpn1961cDamP
351 Ribulose-phosphate 3-epimerase
 
2937 inner membrane transporter YedA
2938 V V.KspC31DcmP (75% identity) V.Kpn1961cDcmP
2939 M M.Ksp1954ORF23690P (97% identity) CCWGG M.Kpn1961cDcmP
2940 235 aa hypothetical protein
 
3476 804 aa hypothetical protein
3477 M M.Kpnu34ORF7640P (100% identity) GATC M.Kpn1961cORF3477P
3478 75 aa hypothetical protein
 
chromosome main
 
350 Cell division protein DamX
351 M M.KspC31DamP (100% identity) GATC M.Kpn1961gDamP
352 Ribulose-phosphate 3-epimerase
 
2938 inner membrane transporter YedA
2939 V V.KspC31DcmP (75% identity) V.Kpn1961gDcmP
2940 M M.Ksp1954ORF23690P (97% identity) CCWGG M.Kpn1961gDcmP
2941 235 aa hypothetical protein
 
3476 804 aa hypothetical protein
3477 M M.Kpnu34ORF7640P (100% identity) GATC M.Kpn1961gORF3477P
3478 75 aa hypothetical protein
 
chromosome main
 
349 Cell division protein DamX
350 M M.KspC31DamP (100% identity) GATC M.Kpn1961bDamP
351 Ribulose-phosphate 3-epimerase
 
2940 inner membrane transporter YedA
2941 V V.KspC31DcmP (75% identity) V.Kpn1961bDcmP
2942 M M.Ksp1954ORF23690P (97% identity) CCWGG M.Kpn1961bDcmP
2943 235 aa hypothetical protein
 
3478 804 aa hypothetical protein
3479 M M.Kpnu34ORF7640P (100% identity) GATC M.Kpn1961bORF3479P
3480 75 aa hypothetical protein
 
plasmid P1
 
5007 82 aa hypothetical protein
5008 R PgeFB2ORFCP (100% identity) CCWGG Kpn1961gORF5009P
5009 M M.PgeFB2ORFCP (100% identity) CCWGG M.Kpn1961gORF5009P
5010 DNA replication protein DnaC
 
plasmid P1
 
5035 995 aa hypothetical protein
5036 M M.Sen20597ORF9240P (100% identity) M.Kpn1961bORF5036P
5037 168 aa hypothetical protein
 
5047 82 aa hypothetical protein
5048 R PgeFB2ORFCP (100% identity) CCWGG Kpn1961bORF5049P
5049 M M.PgeFB2ORFCP (100% identity) CCWGG M.Kpn1961bORF5049P
5050 DNA replication protein DnaC
 
plasmid P1
 
4988 1126 aa hypothetical protein
4989 M M.Sen20597ORF9240P (100% identity) M.Kpn1961cORF4989P
4990 168 aa hypothetical protein
 
plasmid P1
 
4993 1126 aa hypothetical protein
4994 M M.Sen20597ORF9240P (100% identity) M.Kpn1961eORF4994P
4995 168 aa hypothetical protein
 
5006 82 aa hypothetical protein
5007 R PgeFB2ORFCP (100% identity) CCWGG Kpn1961eORF5008P
5008 M M.PgeFB2ORFCP (100% identity) CCWGG M.Kpn1961eORF5008P
5009 DNA replication protein DnaC
 
plasmid P1
 
4943 82 aa hypothetical protein
4944 R PgeFB2ORFCP (100% identity) CCWGG Kpn1961aORF4945P
4945 M M.PgeFB2ORFCP (100% identity) CCWGG M.Kpn1961aORF4945P
4946 DNA replication protein DnaC
 
plasmid P1
 
4987 1126 aa hypothetical protein
4988 M M.Sen20597ORF9240P (100% identity) M.Kpn1961ORF4988P
4989 168 aa hypothetical protein
 
4999 82 aa hypothetical protein
5000 R PgeFB2ORFCP (100% identity) CCWGG Kpn1961ORF5001P
5001 M M.PgeFB2ORFCP (100% identity) CCWGG M.Kpn1961ORF5001P
5002 DNA replication protein DnaC
 
plasmid P1
 
4993 1126 aa hypothetical protein
4994 M M.Sen20597ORF9240P (100% identity) M.Kpn1961dORF4994P
4995 168 aa hypothetical protein
 
5005 82 aa hypothetical protein
5006 R PgeFB2ORFCP (100% identity) CCWGG Kpn1961dORF5007P
5007 M M.PgeFB2ORFCP (100% identity) CCWGG M.Kpn1961dORF5007P
5008 DNA replication protein DnaC
 
plasmid P1
 
5004 82 aa hypothetical protein
5005 R PgeFB2ORFCP (100% identity) CCWGG Kpn1961fORF5006P
5006 M M.PgeFB2ORFCP (100% identity) CCWGG M.Kpn1961fORF5006P
5007 DNA replication protein DnaC
 
plasmid P3
 
202 pseudogene
5349 M M.Kpn531ORF1765P (100% identity) CCWGG M.Kpn1961dORF5349P
??? R Kpn1961gORF5373P (100% identity) CCWGG Kpn1961dORF5349P
224 pseudogene
 
plasmid P3
 
224 pseudogene
??? R Kpn1961gORF5373P (100% identity) CCWGG Kpn1961eORF5353P
5353 M M.Kpn531ORF1765P (100% identity) CCWGG M.Kpn1961eORF5353P
203 pseudogene
 
plasmid P3
 
185 pseudogene
5282 M M.Kpn531ORF1765P (100% identity) CCWGG M.Kpn1961aORF5282P
??? R Kpn1961gORF5373P (100% identity) CCWGG Kpn1961aORF5282P
196 pseudogene
 
plasmid P3
 
5371 278 aa hypothetical protein
??? R Kpn1961eORF5353P (100% identity) CCWGG Kpn1961gORF5373P
5373 M M.Kpn531ORF1765P (100% identity) CCWGG M.Kpn1961gORF5373P
5374 97 aa hypothetical protein
Type IV
ORF Gene Most similar Specificity Name
 
chromosome main
 
4265 93 aa hypothetical protein
4266 R Ksp4251MrrP (100% identity) Kpn1961gMrrP
4267 1095 aa hypothetical protein
 
chromosome main
 
7 IS3 family transposase
4265 R Ksp4251MrrP (100% identity) Kpn1961fMrrP
4266 1095 aa hypothetical protein
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