Escherichia coli 18SZHZ655Rt |
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Putative Escherichia coli 18SZHZ655Rt RM systems
Ref: Liu,B. et al. unpublished
REBASE ref # 34563
| Sequence length: | GenBank #: | |
| Chromosome: | 4,836,940 bp | CP080056 |
| plasmid p655Rt_IncBOKZ: | 108,275 bp | CP080057 |
| plasmid p655Rt_p0111: | 94,084 bp | CP080059 |
REBASE acronym: Eco655Rt
Org_num: 58511
All begin KZO13_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17340 | GTPase family protein | |||
| 17345 | M | M.EcosE1ORFHP (93% identity) | M.Eco655RtORF17345P | |
| 17350 | S | S.EcoEc387ORF33040P (100% identity) | S.Eco655RtORF17345P | |
| 17355 | R | EcosE1ORFHP (96% identity) | Eco655RtORF17345P | |
| 17360 | transposase domain-containing protein | |||
| 19665 | restriction endonuclease | |||
| 19670 | M | M.Esp9308ORFIP (100% identity) | M.Eco655RtORF19670P | |
| 19675 | S | S.EcoYZ311ORF11340P (100% identity) | S.Eco655RtORF19670P | |
| 19680 | R | EcoYZ311ORF11340P (100% identity) | Eco655RtORF19670P | |
| 19685 | endoribonuclease SymE | |||
| plasmid p655Rt_p0111 | ||||
| 24450 | type II toxin-antitoxin system Phd/YefM family | |||
| 24455 | M | M.Eco91CCORF45220P (99% identity) | M.Eco655RtORF24455P | |
| 24460 | S | S.Eco91CCORF45220P (100% identity) | S.Eco655RtORF24455P | |
| 24465 | R | Eco91CCORF45220P (99% identity) | Eco655RtORF24455P | |
| 24470 | 3-phosphatase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1820 | cell division protein DamX | |||
| 1825 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco655RtDamP |
| 1830 | ribulose-phosphate 3-epimerase | |||
| 9225 | phosphohydrolase | |||
| 9230 | M | M.SflWW1DcmP (100% identity) | CCWGG | M.Eco655RtDcmP |
| 9235 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.Eco655RtDcmP |
| 9240 | drug/metabolite exporter YedA | |||
| 19360 | phage lysis protein EssD | |||
| 19365 | M | M.Sso63633ORF22290P (100% identity) | M.Eco655RtORF19365P | |
| 19370 | TrmB family transcriptional regulator | |||
| 19370 | TrmB family transcriptional regulator | |||
| 19375 | R | EcoS0247ORF16915AP (100% identity) | GTCGAC | R1.Eco655RtORF19385P |
| 19380 | R | EcoS0247ORF16915BP (100% identity) | GTCGAC | R2.Eco655RtORF19385P |
| 19385 | M | M.EcoST131ORF16015P (100% identity) | GTCGAC | M.Eco655RtORF19385P |
| 19390 | antitermination protein | |||
| plasmid p655Rt_IncBOKZ | ||||
| 23080 | 62 aa hypothetical protein | |||
| 23085 | M | M.Kpn2108ORF26890P (100% identity) | CTGAAG | M.Eco655RtORF23085P |
| 23090 | RM | Kpn2108ORF26890P (99% identity) | CTGAAG | Eco655RtORF23085P |
| 23095 | type I restriction-modification system subunit M | |||
| 23185 | 103 aa hypothetical protein | |||
| 23190 | M | M.SenNS015ORFEP (100% identity) | SAY | M.Eco655RtORF23190P |
| 23195 | 73 aa hypothetical protein | |||
| plasmid p655Rt_p0111 | ||||
| 24545 | 311 aa hypothetical protein | |||
| 24550 | M | M.Eco1919D3ORF1330P (99% identity) | M.Eco655RtORF24550P | |
| 24555 | recombination-associated protein RdgC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17470 | IS5 family transposase | |||
| 17475 | R | SflN97McrCP (100% identity) | Eco655RtMcrCP | |
| 17480 | R | SflN97McrBP (100% identity) | Eco655RtMcrBP | |
| 17485 | zinc-ribbon domain-containing protein | |||
| 19660 | BrnT family toxin | |||
| 19665 | R | EcosS9MrrP (100% identity) | Eco655RtMrrP | |
| 19670 | type I restriction-modification system subunit | |||