Salmonella enterica subsp. enterica serovar Typhi BRD948 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Typhi BRD948 RM systems
Ref: Tiwari,S. et al. unpublished
REBASE ref # 34608
| Sequence length: | GenBank #: | |
| chromosome 1: | 4,790,681 bp | OW706512 |
| chromosome 1: | 4,582,006 bp | OW704602 |
| chromosome 1: | 4,790,262 bp | OW707734 |
| chromosome 1: | 4,775,892 bp | OW704627 |
| chromosome 1: | 4,789,758 bp | OW706648 |
| chromosome 1: | 4,783,830 bp | OW704291 |
REBASE acronym:
Org_num:
All begin
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| ??? | S | S.StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | S.Sen948dORFAP |
| ??? | M | M.SenTY585ORFHP (100% identity) | GAANNNNNNNNTCGC | M.Sen948dORFAP |
| ??? | R | StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | Sen948dORFAP |
| chromosome 1 | ||||
| ??? | S | S.StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | S.Sen948bORFFP |
| ??? | M | M.SenTY585ORFHP (100% identity) | GAANNNNNNNNTCGC | M.Sen948bORFFP |
| ??? | R | StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | Sen948bORFFP |
| chromosome 1 | ||||
| ??? | R | StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | Sen948aORFHP |
| ??? | M | M.SenTY585ORFHP (100% identity) | GAANNNNNNNNTCGC | M.Sen948aORFHP |
| ??? | S | S.Sen65329ORFLP (100% identity) | GAANNNNNNNNTCGC | S.Sen948aORFHP |
| chromosome 1 | ||||
| ??? | S | S.Sen9084ORFEP (100% identity) | GAANNNNNNNNTCGC | S.Sen948cORFDP |
| ??? | M | M.SenTY585ORFHP (100% identity) | GAANNNNNNNNTCGC | M.Sen948cORFDP |
| ??? | R | StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | Sen948cORFDP |
| chromosome 1 | ||||
| ??? | S | S.StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | S.Sen948ORFAP |
| ??? | M | M.SenTY585ORFHP (100% identity) | GAANNNNNNNNTCGC | M.Sen948ORFAP |
| ??? | R | StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | Sen948ORFAP |
| chromosome 1 | ||||
| ??? | R | StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | Sen948eORFEP |
| ??? | M | M.SenTY585ORFHP (100% identity) | GAANNNNNNNNTCGC | M.Sen948eORFEP |
| ??? | S | S.StyTORF4575P (100% identity) | GAANNNNNNNNTCGC | S.Sen948eORFEP |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| ??? | M | M.StyTDcmP (100% identity) | CCWGG | M.Sen948dDcmP |
| ??? | V | V.StyTDcmP (100% identity) | CCWGG | V.Sen948dDcmP |
| ??? | M | M.StyTORF1914P (100% identity) | ATGCAT | M.Sen948dORFGP |
| ??? | M | M.StyTORF1926P (100% identity) | GATC | M.Sen948dORFFP |
| ??? | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen948dORFEP |
| ??? | M | M.StyTORF3409P (100% identity) | GATC | M.Sen948dORFDP |
| ??? | M | M.StyTDamP (100% identity) | GATC | M.Sen948dDamP |
| ??? | M | M.StyTORF4329P (100% identity) | GATC | M.Sen948dORFCP |
| ??? | R | Senst12ORF9665P (100% identity) | Sen948dORFBP | |
| chromosome 1 | ||||
| ??? | M | M.StyTORF4329P (100% identity) | GATC | M.Sen948bORFHP |
| ??? | R | Senst12ORF9665P (100% identity) | Sen948bORFGP | |
| ??? | M | M.StyTDcmP (100% identity) | CCWGG | M.Sen948bDcmP |
| ??? | V | V.StyTDcmP (100% identity) | CCWGG | V.Sen948bDcmP |
| ??? | M | M.StyTORF1914P (100% identity) | ATGCAT | M.Sen948bORFDP |
| ??? | M | M.StyTORF1926P (100% identity) | GATC | M.Sen948bORFCP |
| ??? | M | M.StyTDamP (100% identity) | GATC | M.Sen948bDamP |
| ??? | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen948bORFAP |
| chromosome 1 | ||||
| ??? | R | Senst12ORF9665P (100% identity) | Sen948aORFGP | |
| ??? | M | M.StyTORF4329P (100% identity) | GATC | M.Sen948aORFFP |
| ??? | M | M.StyTDamP (100% identity) | GATC | M.Sen948aDamP |
| ??? | M | M.StyTORF3409P (100% identity) | GATC | M.Sen948aORFEP |
| ??? | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen948aORFDP |
| ??? | M | M.StyTORF1926P (100% identity) | GATC | M.Sen948aORFCP |
| ??? | M | M.StyTORF1914P (100% identity) | ATGCAT | M.Sen948aORFBP |
| ??? | V | V.StyTDcmP (100% identity) | CCWGG | V.Sen948aDcmP |
| ??? | M | M.StyTDcmP (100% identity) | CCWGG | M.Sen948aDcmP |
| chromosome 1 | ||||
| ??? | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen948cORFHP |
| ??? | M | M.StyTORF3409P (100% identity) | GATC | M.Sen948cORFGP |
| ??? | M | M.StyTDamP (100% identity) | GATC | M.Sen948cDamP |
| ??? | M | M.StyTORF4329P (100% identity) | GATC | M.Sen948cORFFP |
| ??? | R | Senst12ORF9665P (100% identity) | Sen948cORFEP | |
| ??? | M | M.StyTDcmP (100% identity) | CCWGG | M.Sen948cDcmP |
| ??? | V | V.StyTDcmP (100% identity) | CCWGG | V.Sen948cDcmP |
| ??? | M | M.StyTORF1914P (100% identity) | ATGCAT | M.Sen948cORFBP |
| chromosome 1 | ||||
| ??? | M | M.StyTDcmP (100% identity) | CCWGG | M.Sen948DcmP |
| ??? | V | V.StyTDcmP (100% identity) | CCWGG | V.Sen948DcmP |
| ??? | M | M.StyTORF1914P (100% identity) | ATGCAT | M.Sen948ORFGP |
| ??? | M | M.StyTORF1926P (100% identity) | GATC | M.Sen948ORFFP |
| ??? | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen948ORFEP |
| ??? | M | M.StyTORF3409P (100% identity) | GATC | M.Sen948ORFDP |
| ??? | M | M.StyTDamP (100% identity) | GATC | M.Sen948DamP |
| ??? | M | M.StyTORF4329P (100% identity) | GATC | M.Sen948ORFCP |
| ??? | R | Senst12ORF9665P (100% identity) | Sen948ORFBP | |
| chromosome 1 | ||||
| ??? | M | M.StyTORF1926P (100% identity) | GATC | M.Sen948eORFHP |
| ??? | M | M.StyTORF1914P (100% identity) | ATGCAT | M.Sen948eORFGP |
| ??? | V | V.StyTDcmP (100% identity) | CCWGG | V.Sen948eDcmP |
| ??? | M | M.StyTDcmP (100% identity) | CCWGG | M.Sen948eDcmP |
| ??? | R | Senst12ORF9665P (100% identity) | Sen948eORFDP | |
| ??? | M | M.StyTORF4329P (100% identity) | GATC | M.Sen948eORFCP |
| ??? | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen948eORFBP |
| ??? | M | M.StyTORF3409P (100% identity) | GATC | M.Sen948eORFAP |
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| ??? | R | StyTORF872P (100% identity) | CAAACC | Sen948dORFHP |
| ??? | M | M.SmaBWH35ORF16840P (100% identity) | CAAACC | M.Sen948dORFHP |
| ??? | R | StyTORF2507P (99% identity) | CAGAG | Sen948dORFIP |
| ??? | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen948dORFIP |
| chromosome 1 | ||||
| ??? | R | StyTORF872P (100% identity) | CAAACC | Sen948bORFEP |
| ??? | M | M.SmaBWH35ORF16840P (100% identity) | CAAACC | M.Sen948bORFEP |
| ??? | R | StyTORF2507P (99% identity) | CAGAG | Sen948bORFIP |
| ??? | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen948bORFIP |
| chromosome 1 | ||||
| ??? | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen948aORFIP |
| ??? | R | StyTORF2507P (99% identity) | CAGAG | Sen948aORFIP |
| chromosome 1 | ||||
| ??? | R | StyTORF872P (100% identity) | CAAACC | Sen948cORFCP |
| ??? | M | M.SmaBWH35ORF16840P (100% identity) | CAAACC | M.Sen948cORFCP |
| ??? | R | StyTORF2507P (99% identity) | CAGAG | Sen948cORFIP |
| ??? | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen948cORFIP |
| chromosome 1 | ||||
| ??? | R | StyTORF872P (100% identity) | CAAACC | Sen948ORFHP |
| ??? | M | M.SmaBWH35ORF16840P (100% identity) | CAAACC | M.Sen948ORFHP |
| ??? | R | StyTORF2507P (99% identity) | CAGAG | Sen948ORFIP |
| ??? | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen948ORFIP |
| chromosome 1 | ||||
| ??? | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen948eORFIP |
| ??? | R | StyTORF2507P (100% identity) | CAGAG | Sen948eORFIP |
| ??? | M | M.SmaBWH35ORF16840P (100% identity) | CAAACC | M.Sen948eORFFP |
| ??? | R | StyTORF872P (100% identity) | CAAACC | Sen948eORFFP |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| ??? | R | StyTMrrP (100% identity) | Sen948bMrrP | |
| chromosome 1 | ||||
| ??? | R | StyTMrrP (100% identity) | Sen948aMrrP | |
| chromosome 1 | ||||
| ??? | R | StyTMrrP (100% identity) | Sen948cMrrP | |
| chromosome 1 | ||||
| ??? | R | StyTMrrP (100% identity) | Sen948eMrrP | |