Vibrio species ED002 |
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Putative Vibrio species ED002 RM systems
Ref: Bruce,T. et al. unpublished
REBASE ref # 34407
| Sequence length: | GenBank #: | |
| chromosome 1: | 3,645,534 bp | CP080238 |
| plasmid p1-ED002: | 32,685 bp | CP080241 |
REBASE acronym: Vsp002
Org_num: 58231
All begin ITG12_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 3580 | 72 aa hypothetical protein | |||
| 3585 | S | S.Vow403ORF8030P (62% identity) | S.Vsp002ORF3590P | |
| 3590 | M | M.Vco27227ORFBP (96% identity) | M.Vsp002ORF3590P | |
| 3595 | R | Vco27227ORFBP (97% identity) | Vsp002ORF3590P | |
| 3600 | 124 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 5000 | 405 aa hypothetical protein | |||
| 5005 | R | Vja810cORFAP (98% identity) | Vsp002ORF5005P | |
| 5010 | sphingomyelin phosphodiesterase | |||
| 6485 | DNA phosphorothioation-associated putative | |||
| 6490 | M | M.VcaIFL1DndBP (99% identity) | M.Vsp002DndBP | |
| 6495 | DNA phosphorothioation system sulfurtransferase | |||
| 6490 | DNA sulfur modification protein DndB | |||
| 6495 | M | M.ValZLV3DndCP (99% identity) | M.Vsp002DndCP | |
| 6500 | DNA sulfur modification protein DndD | |||
| 6495 | DNA phosphorothioation system sulfurtransferase | |||
| 6500 | M | M.Vvu663DndDP (98% identity) | M.Vsp002DndDP | |
| 6505 | DNA sulfur modification protein DndE | |||
| 6500 | DNA sulfur modification protein DndD | |||
| 6505 | M | M.Vvu054DndEP (90% identity) | M.Vsp002DndEP | |
| 6510 | class I SAM-dependent methyltransferase | |||
| 6520 | 118 aa hypothetical protein | |||
| 6525 | R | Vvu054DptHP (98% identity) | Vsp002DptHP | |
| 6530 | DNA phosphorothioation-dependent restriction | |||
| 6525 | DNA phosphorothioation-dependent restriction | |||
| 6530 | R | Vsp43153DptGP (99% identity) | Vsp002DptGP | |
| 6535 | DNA phosphorothioation-dependent restriction | |||
| 6530 | DNA phosphorothioation-dependent restriction | |||
| 6535 | R | Vsp43153DptFP (98% identity) | Vsp002DptFP | |
| 6540 | WYL domain-containing protein | |||
| plasmid p1-ED002 | ||||
| 27590 | integrase core domain-containing protein | |||
| 27595 | M | M.VcaIFL1ORF28695P (84% identity) | M1.Vsp002ORF27455P | |
| 27445 | DNA topoisomerase IV subunit B | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 3555 | STY4851/ECs_5259 family protein | |||
| 3560 | R | Vsp1615McrCP (83% identity) | Vsp002McrCP | |
| 3565 | R | Vsp1615McrBP (90% identity) | Vsp002McrBP | |
| 3570 | tetratricopeptide repeat protein | |||