Escherichia coli EC6563 |
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Putative Escherichia coli EC6563 RM systems
Ref: Zhang,X. unpublished
REBASE ref # 24887
| Sequence length: | GenBank #: | |
| Chromosome: | 4,850,951 bp | CP095856 |
| plasmid pEC6563-3: | 63,122 bp | CP095859 |
| plasmid pEC6563-MCR: | 230,727 bp | CP095857 |
| plasmid pEC6563-NDM5: | 107,055 bp | CP095858 |
REBASE acronym: Eco6563
Org_num: 57823
All begin MYG04_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17855 | NADPH-dependent aldehyde reductase Ahr | |||
| 17865 | R | Eco9070ORF4118P (99% identity) | Eco6563ORF17875P | |
| 17870 | S | S.Eal4ORF23880P (68% identity) | S.Eco6563ORF17875P | |
| 17875 | M | M.Eco4BL08ORF40300P (100% identity) | M.Eco6563ORF17875P | |
| 17880 | DUF4942 domain-containing protein | |||
| 18085 | endoribonuclease SymE | |||
| 18090 | S | S.Eco4BL08ORF39860P (100% identity) | S.Eco6563ORF18095P | |
| 18095 | M | M.EcoJX03ORF19005P (100% identity) | M.Eco6563ORF18095P | |
| 18100 | R | Eco8SOC08ORF11210P (99% identity) | Eco6563ORF18095P | |
| 18105 | adenine/cytosine-specific restriction | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15 | 501 aa hypothetical protein | |||
| 20 | M | M.Ecoww7ORF20P (100% identity) | TGGCCA | M.Eco6563ORF20P |
| 25 | phage portal protein | |||
| 5400 | drug/metabolite exporter YedA | |||
| 5405 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.Eco6563DcmP |
| 5410 | M | M.SspS13DcmP (100% identity) | CCWGG | M.Eco6563DcmP |
| 5415 | phosphohydrolase | |||
| 10890 | transposase | |||
| 10895 | RM | SflLIN17ORF3140P (100% identity) | Eco6563ORF10895P | |
| 10900 | DEAD/DEAH box helicase | |||
| 11995 | DNA-binding transcriptional regulator Fis | |||
| 12000 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco6563ORF12000P |
| 12005 | DUF2556 family protein | |||
| 12620 | ribulose-phosphate 3-epimerase | |||
| 12625 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco6563DamP |
| 12630 | cell division protein DamX | |||
| 17065 | superoxide dismutase [Cu-Zn] SodC | |||
| 17070 | R | SenS530DptFP (100% identity) | Eco6563DptFP | |
| 17075 | DNA phosphorothioation-dependent restriction | |||
| 17070 | DNA phosphorothioation-dependent restriction | |||
| 17075 | R | SenI222DptGP (100% identity) | Eco6563DptGP | |
| 17080 | DNA phosphorothioation-dependent restriction | |||
| 17075 | DNA phosphorothioation-dependent restriction | |||
| 17080 | R | SenS530DptHP (100% identity) | Eco6563DptHP | |
| 17085 | DUF262 domain-containing protein | |||
| 17090 | ATP-binding protein | |||
| 17095 | M | M.SenS530DndEP (100% identity) | M.Eco6563DndEP | |
| 17100 | DNA sulfur modification protein DndD | |||
| 17095 | DNA sulfur modification protein DndE | |||
| 17100 | M | M.SenS530DndDP (100% identity) | M.Eco6563DndDP | |
| 17105 | DNA phosphorothioation system sulfurtransferase | |||
| 17100 | DNA sulfur modification protein DndD | |||
| 17105 | M | M.SenS530DndCP (100% identity) | M.Eco6563DndCP | |
| 17110 | DNA sulfur modification protein DndB | |||
| 17105 | DNA phosphorothioation system sulfurtransferase | |||
| 17110 | M | M.SenS530DndBP (100% identity) | M.Eco6563DndBP | |
| 17115 | DNA-binding protein | |||
| 17890 | McrC family protein | |||
| 17895 | R | EcoPSJ29ORF37350P (99% identity) | Eco6563ORF17895P | |
| 17900 | HNH endonuclease | |||
| 19820 | antitermination protein | |||
| 19825 | M | M.SflN116ORF17750P (100% identity) | M.Eco6563ORF19825P | |
| 19830 | AAA family ATPase | |||
| 21315 | cell division protein ZapA | |||
| 21320 | M | M.EcoTL14ORF18050P (100% identity) | M.Eco6563ORF21320P | |
| 21325 | DUF1317 domain-containing protein | |||
| 22970 | TraR/DksA family transcriptional regulator | |||
| 22975 | M | M.Eco9076ORF58P (100% identity) | GATC | M.Eco6563ORF22975P |
| 22980 | replication endonuclease | |||
| plasmid pEC6563-3 | ||||
| 25455 | conjugal transfer mating pair stabilization | |||
| 25460 | M | M.UbapRSB107ORFAP (66% identity) | M.Eco6563ORF25460P | |
| 25465 | 103 aa hypothetical protein | |||
| plasmid pEC6563-MCR | ||||
| 24450 | thermonuclease family protein | |||
| 24455 | M | M.YpsF1ORFCP (100% identity) | CCWGG | M.Eco6563ORF24455P |
| 24460 | 55 aa hypothetical protein | |||
| 24575 | 48 aa hypothetical protein | |||
| 24580 | M | M.YpsF1ORFBP (100% identity) | M.Eco6563ORF24580P | |
| 24585 | 202 aa hypothetical protein | |||
| 24695 | DNA-binding protein | |||
| 24700 | M | M.YpsF1ORFDP (77% identity) | M.Eco6563ORF24700P | |
| 24705 | IS3 family transposase | |||
| plasmid pEC6563-NDM5 | ||||
| 24945 | 103 aa hypothetical protein | |||
| 24950 | M | M.SspPIBORF23080P (100% identity) | M.Eco6563ORF24950P | |
| 24955 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17880 | DUF4942 domain-containing protein | |||
| 17885 | R | Eco4BL08McrBP (100% identity) | Eco6563McrBP | |
| 17890 | R | EcoPSJ29McrC2P (100% identity) | Eco6563McrCP | |
| 17895 | HNH endonuclease | |||
| 18100 | type I restriction-modification system | |||
| 18105 | R | Eco4BL08MrrP (100% identity) | Eco6563MrrP | |
| 18110 | GTPase | |||