Helicobacter pylori Hpfe0002 |
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Putative Helicobacter pylori Hpfe0002 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,615,483 bp
GenBank #: CP094172
REBASE acronym: Hpyfe2
Org_num: 57266
All begin MPG23_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4760 | hydroxyethylthiazole kinase | |||
| 4765 | R | HpyK008ORF2545P (95% identity) | CCANNNNNNRTAY | Hpyfe2ORF4775P |
| 4770 | S | S.Hpyfe2ORF4480P (100% identity) | CCANNNNNNRTAY | S.Hpyfe2ORF4775P |
| 4775 | M | M.Hpyfe115ORF3010P (96% identity) | CCANNNNNNRTAY | M.Hpyfe2ORF4775P |
| 4780 | DNA cytosine methyltransferase | |||
| 5045 | type I restriction endonuclease | |||
| 5050 | R | Hpyfe8ORF2045P (96% identity) | CTANNNNNNTC | Hpyfe2ORF5055P |
| 5055 | M | M.Hpyfe5ORF5065P (98% identity) | CTANNNNNNTC | M.Hpyfe2ORF5055P |
| 5060 | S | S.Hpyfe93ORF4995P (99% identity) | CTANNNNNNTC | S.Hpyfe2ORF5055P |
| 5070 | RNA degradosome polyphosphate kinase | |||
| 7680 | M48 family metallopeptidase | |||
| 7685 | R | HpyTW02VP (96% identity) | CRTANNNNNNNTG | Hpyfe2ORF7690P |
| 7690 | M | M.HpyTW07XV (97% identity) | CRTANNNNNNNTG | M.Hpyfe2ORF7690P |
| 7695 | S | S.Hpyfe19ORF7830P (96% identity) | CRTANNNNNNNTG | S.Hpyfe2ORF7690P |
| 7700 | cag pathogenicity island protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | 713 aa hypothetical protein | |||
| 55 | RM | HpyCHN1ORF7280P (91% identity) | Hpyfe2ORF55P | |
| 60 | transcription termination factor NusA | |||
| 265 | ComF family protein | |||
| 270 | RM | HpyTW16ORF6855P (99% identity) | CYANNNNNNTTC | Hpyfe2ORF270P |
| 275 | S | S.Hpyfe10ORF295P (49% identity) | S1.Hpyfe2ORF270P | |
| 280 | S | S2.HpyK111ORF7090P (96% identity) | S2.Hpyfe2ORF270P | |
| 285 | DNA polymerase I | |||
| 1390 | serine O-acetyltransferase | |||
| 1395 | R | Hpyfe92ORF1610P (95% identity) | CATG | Hpyfe2ORF1400P |
| 1400 | M | M.Hpyfe96ORF1475P (100% identity) | CATG | M.Hpyfe2ORF1400P |
| 1405 | HAD family hydrolase | |||
| 1845 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1850 | M | M.HpyMA10XIII (98% identity) | GCGC | M.Hpyfe2ORF1850P |
| 1855 | 144 aa hypothetical protein | |||
| 2020 | Laminin subunit alpha-2 precursor | |||
| 2025 | R | Hpyfe85ORF2060P (99% identity) | TCNNGA | Hpyfe2ORF2030P |
| 2030 | M | M.HpyK114XIV (99% identity) | TCNNGA | M.Hpyfe2ORF2030P |
| 2035 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2670 | ATP-dependent helicase | |||
| 2675 | M | M.HpySG04XI (98% identity) | GTNNAC | M.Hpyfe2ORF2675P |
| 2680 | R | Hpyfe10ORF2855P (95% identity) | GTNNAC | Hpyfe2ORF2675P |
| 2685 | flagellar hook protein FlgE | |||
| 2870 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2875 | M | M.HpyG272V (97% identity) | GTAC | M.Hpyfe2ORF2875P |
| 2880 | R | HpyG272VP (100% identity) | GTAC | Hpyfe2ORF2875P |
| 2885 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3950 | outer membrane protein | |||
| 3955 | RM | HpyTN2ORF7280P (79% identity) | Hpyfe2ORF3955P | |
| 3960 | (Fe-S)-binding protein | |||
| 4775 | type I restriction-modification system subunit | |||
| 4780 | M | M.Hpyfe83ORF4630P (100% identity) | GGCC | M.Hpyfe2ORF4780P |
| 4785 | R | Hpyfe83ORF4630P (99% identity) | GGCC | Hpyfe2ORF4780P |
| 4790 | phosphatase PAP2 family protein | |||
| 4935 | catalase | |||
| 4940 | R | Hpyfe83ORF4795P (99% identity) | ACGT | Hpyfe2ORF4945P |
| 4945 | M | M.Hpyfe96ORF4835P (99% identity) | ACGT | M.Hpyfe2ORF4945P |
| 4950 | GIY-YIG nuclease family protein | |||
| 4945 | DNA cytosine methyltransferase | |||
| 4950 | R | HpySW01IXP (97% identity) | ACNGT | Hpyfe2ORF4955P |
| 4955 | M | M.HpyV002II (99% identity) | ACNGT | M.Hpyfe2ORF4955P |
| 4960 | translational GTPase TypA | |||
| 4965 | lipopolysaccharide heptosyltransferase family | |||
| 4970 | M | M.Hpyfe100ORF4805P (97% identity) | ATTAAT | M.Hpyfe2ORF4970P |
| 4975 | Hop family outer membrane protein HopJ/HopK | |||
| 5680 | 125 aa hypothetical protein | |||
| 5685 | M | M.HpyMA10IV (100% identity) | CTNAG | M.Hpyfe2ORF5685P |
| 5690 | R | HpySG08VIIP (99% identity) | CTNAG | Hpyfe2ORF5685P |
| 5695 | polysaccharide deacetylase | |||
| 5925 | AAA family ATPase | |||
| 5930 | M | M.Hpy377ORFHP (99% identity) | CCGG | M.Hpyfe2ORF5930P |
| 5935 | R | HpyK052IVP (97% identity) | CCGG | Hpyfe2ORF5930P |
| 5940 | 204 aa hypothetical protein | |||
| 5940 | 204 aa hypothetical protein | |||
| 5945 | M | M.Hpyfe24ORF5940P (99% identity) | TCGA | M.Hpyfe2ORF5945P |
| 5950 | exodeoxyribonuclease VII large subunit | |||
| 6365 | pseudaminic acid synthase | |||
| 6370 | R | R1.Hpyfe17ORF6170P (98% identity) | R1.Hpyfe2ORF6380P | |
| 6375 | R | R1.HpyK053ORF940P (96% identity) | R2.Hpyfe2ORF6380P | |
| 6380 | M | M.Hpyfe93ORF6315P (99% identity) | M.Hpyfe2ORF6380P | |
| 6385 | elongation factor P | |||
| 6780 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6785 | M | M.Hpyfe75ORF6725P (97% identity) | GATC | M.Hpyfe2ORF6785P |
| 6790 | R | Hpyfe23ORF6770P (91% identity) | GATC | Hpyfe2ORF6785P |
| 6800 | ACP S-malonyltransferase | |||
| 6980 | sodium/proline symporter PutP | |||
| 6985 | R | HpyTW05IXP (95% identity) | CCTC | Hpyfe2ORF6990P |
| 6990 | M | M1.Hpyfe83ORF6810P (99% identity) | CCTC | M1.Hpyfe2ORF6990P |
| 6995 | M | M1.HpyTW19IX (98% identity) | CCTC | M2.Hpyfe2ORF6990P |
| 7000 | agmatine deiminase | |||
| 7040 | S41 family peptidase | |||
| 7045 | RM | HpySG19ORF250P (84% identity) | Hpyfe2ORF7045P | |
| 7050 | carboxylating nicotinate-nucleotide | |||
| 7575 | 177 aa hypothetical protein | |||
| 7580 | R | HpySG02XIIIP (93% identity) | Hpyfe2ORF7585P | |
| 7585 | M | M.HpysHP34ORF1860P (90% identity) | M.Hpyfe2ORF7585P | |
| 7590 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyNCI32ORFGP (95% identity) | M.Hpyfe2ORF40P | |
| 45 | R | Hpyfe33ORF40P (97% identity) | Hpyfe2ORF40P | |
| 50 | 713 aa hypothetical protein | |||
| 610 | biotin synthase | |||
| 615 | R | HpySG19ORF6625P (94% identity) | Hpyfe2ORF620P | |
| 620 | M | M.Hpyfe54ORF655P (97% identity) | M.Hpyfe2ORF620P | |
| 625 | DNA/RNA non-specific endonuclease | |||
| 7100 | copper response regulator transcription factor | |||
| ??? | M | M.HpyPE113ORF6755P (95% identity) | M.Hpyfe2ORF7105P | |
| 7110 | R | HpyQ59ORFCP (96% identity) | Hpyfe2ORF7105P | |
| 7115 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2915 | type I glutamate--ammonia ligase | |||
| 2920 | R | HpyTW22GmrSDP (88% identity) | Hpyfe2GmrSDP | |
| 2925 | 50S ribosomal protein L9 | |||
| 3710 | sel1 repeat family protein | |||
| 3715 | R | HpyOK304GmrSD2P (95% identity) | Hpyfe2GmrSD2P | |
| 3720 | NAD(P)H-dependent oxidoreductase | |||