Helicobacter pylori Hpfe0004 |
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Putative Helicobacter pylori Hpfe0004 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,560,176 bp
GenBank #: CP094170
REBASE acronym: Hpyfe4
Org_num: 57268
All begin MPF82_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4285 | outer membrane beta-barrel protein HofF | |||
| 4290 | S | S.HpyPE130ORF2875P (93% identity) | S.Hpyfe4ORF4290P | |
| 4295 | cadmium-translocating P-type ATPase | |||
| 4845 | type I restriction endonuclease | |||
| 4850 | R | Hpy155ORF5340P (69% identity) | Hpyfe4ORF4855P | |
| 4855 | M | M.HpyK002ORF2375P (98% identity) | M.Hpyfe4ORF4855P | |
| 4860 | S | S.HpyJ022ORF2295P (98% identity) | S.Hpyfe4ORF4855P | |
| 4870 | RNA degradosome polyphosphate kinase | |||
| 7415 | M48 family metallopeptidase | |||
| 7420 | R | Hpyfe5ORF7635P (96% identity) | Hpyfe4ORF7425P | |
| 7425 | M | M.HpysHP34ORF1765P (97% identity) | M.Hpyfe4ORF7425P | |
| 7430 | CAAX protease | |||
| 7435 | S | S.HpyCA1ORF7415P (98% identity) | S.Hpyfe4ORF7425P | |
| 7440 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpyAR8ORF7235P (93% identity) | Hpyfe4ORF55P | |
| 60 | transcription termination factor NusA | |||
| 260 | ComF family protein | |||
| 265 | RM | HpyHK721ORFIP (98% identity) | CYANNNNNNTTC | Hpyfe4ORF265P |
| 270 | S | S1.HpySG38ORF7170P (99% identity) | S1.Hpyfe4ORF265P | |
| 275 | S | S2.HpySG13ORF6805P (97% identity) | S2.Hpyfe4ORF265P | |
| 280 | DNA polymerase I | |||
| 1405 | serine O-acetyltransferase | |||
| 1410 | R | HpyMA12IP (95% identity) | CATG | Hpyfe4ORF1415P |
| 1415 | M | M.HpyHP22ORF4195P (99% identity) | CATG | M.Hpyfe4ORF1415P |
| 1420 | HAD family hydrolase | |||
| 1585 | purine-nucleoside phosphorylase | |||
| 1590 | R | Hpyfe63ORF1580P (97% identity) | TCNGA | Hpyfe4ORF1595P |
| 1595 | M | M.HpySG08XIV (99% identity) | TCNGA | M.Hpyfe4ORF1595P |
| 1600 | Hop family adhesin HopQ | |||
| 1865 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1870 | M | M.Hpyfe63ORF1855P (98% identity) | GCGC | M.Hpyfe4ORF1870P |
| 1875 | 144 aa hypothetical protein | |||
| 2045 | Laminin subunit alpha-2 precursor | |||
| 2050 | R | Hpyfe85ORF2060P (99% identity) | TCNNGA | Hpyfe4ORF2055P |
| 2055 | M | M.HpySG13XIII (99% identity) | TCNNGA | M.Hpyfe4ORF2055P |
| 2060 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2690 | ATP-dependent helicase | |||
| 2695 | M | M.Hpyfe86ORF2720P (98% identity) | GTNNAC | M.Hpyfe4ORF2695P |
| 2700 | R | HpyC125VIIIP (97% identity) | GTNNAC | Hpyfe4ORF2695P |
| 2705 | flagellar hook protein FlgE | |||
| 2895 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2900 | M | M.Hpyfe29ORF4745P (97% identity) | GTAC | M.Hpyfe4ORF2900P |
| 2905 | R | HpyISR6IXP (85% identity) | GTAC | Hpyfe4ORF2900P |
| 2910 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3715 | (Fe-S)-binding protein | |||
| 3720 | RM | HpyPF57ORF3445P (94% identity) | Hpyfe4ORF3720P | |
| 3725 | outer membrane protein | |||
| 4735 | catalase | |||
| 4740 | R | Hpy5ORF5810P (98% identity) | ACGT | Hpyfe4ORF4745P |
| 4745 | M | M.Hpyfe120ORF4880P (98% identity) | ACGT | M.Hpyfe4ORF4745P |
| 4750 | GIY-YIG nuclease family protein | |||
| 4745 | DNA cytosine methyltransferase | |||
| 4750 | R | Hpyfe37ORF4750P (99% identity) | ACNGT | Hpyfe4ORF4755P |
| 4755 | M | M.Hpy63ORF486P (99% identity) | ACNGT | M.Hpyfe4ORF4755P |
| 4760 | translational GTPase TypA | |||
| 4765 | lipopolysaccharide heptosyltransferase family | |||
| 4770 | M | M.HpyJ019IV (98% identity) | ATTAAT | M.Hpyfe4ORF4770P |
| 4775 | Hop family outer membrane protein HopJ/HopK | |||
| 5715 | AAA family ATPase | |||
| 5720 | M | M.Hpyfe37ORF5730P (97% identity) | CCGG | M.Hpyfe4ORF5720P |
| 5725 | R | HpyCHN9IVP (96% identity) | CCGG | Hpyfe4ORF5720P |
| 5730 | exodeoxyribonuclease VII large subunit | |||
| 6140 | pseudaminic acid synthase | |||
| 6145 | R | R2.Hpyfe38ORF6265P (92% identity) | R1.Hpyfe4ORF6145P | |
| 6150 | R | R2.Hpyfe2ORF6380P (96% identity) | R2.Hpyfe4ORF6145P | |
| 6155 | 95 aa hypothetical protein | |||
| 6545 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6550 | M | M.Hpy53ORFAP (97% identity) | GATC | M.Hpyfe4ORF6550P |
| 6555 | R | HpyHP22ORF1835P (95% identity) | GATC | Hpyfe4ORF6550P |
| 6565 | ACP S-malonyltransferase | |||
| 6730 | DNA cytosine methyltransferase | |||
| 6735 | R | Hpyfe49ORF6980P (97% identity) | CCTC | Hpyfe4ORF6740P |
| 6740 | M | M2.HpyOK310ORFLP (99% identity) | CCTC | M1.Hpyfe4ORF6740P |
| 6745 | M | M1.HpyOK306ORFQP (98% identity) | CCTC | M2.Hpyfe4ORF6740P |
| 6750 | agmatine deiminase | |||
| 6790 | S41 family peptidase | |||
| ??? | RM | HpyF225ORFJP (93% identity) | Hpyfe4ORF6795P | |
| 6805 | carboxylating nicotinate-nucleotide | |||
| 7310 | 107 aa hypothetical protein | |||
| 7315 | R | HpyT029ORF7315P (99% identity) | TGCA | Hpyfe4ORF7320P |
| 7320 | M | M.Hpy1100ORFVP (99% identity) | TGCA | M.Hpyfe4ORF7320P |
| 7325 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyQ59ORFWP (97% identity) | GWCAY | M.Hpyfe4ORF40P |
| 50 | R | HpyCHN6ORF6875P (97% identity) | GWCAY | Hpyfe4ORF40P |
| 55 | class I SAM-dependent DNA methyltransferase | |||
| 615 | type III restriction endonuclease subunit R | |||
| 620 | R | HpyU011ORF6810P (94% identity) | Hpyfe4ORF625P | |
| 625 | M | M.Hpyfe127ORF710P (96% identity) | M.Hpyfe4ORF625P | |
| 630 | ABC transporter ATP-binding protein/permease | |||
| 6855 | copper response regulator transcription factor | |||
| 6860 | M | M.Hpybs2ORFYP (95% identity) | M.Hpyfe4ORF6860P | |
| 6865 | R | HpyMA15ORF205P (96% identity) | Hpyfe4ORF6860P | |
| 6870 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2940 | type I glutamate--ammonia ligase | |||
| 2945 | R | Hpyfe10GmrSDP (90% identity) | Hpyfe4GmrSDP | |
| 2950 | 50S ribosomal protein L9 | |||
| 3530 | sel1 repeat family protein | |||
| 3535 | R | HpyU425GmrSD2P (95% identity) | Hpyfe4GmrSD2P | |
| 3540 | NAD(P)H-dependent oxidoreductase | |||