Helicobacter pylori Hpfe0006 |
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Putative Helicobacter pylori Hpfe0006 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,559,683 bp
GenBank #: CP094168
REBASE acronym: Hpyfe6
Org_num: 57269
All begin MPG70_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4255 | outer membrane beta-barrel protein HofF | |||
| 4260 | S | S.Hpyfe6ORF4560P (100% identity) | CTANNNNNNNNTTG | S.Hpyfe6ORF4260P |
| 4265 | cadmium-translocating P-type ATPase | |||
| 4545 | hydroxyethylthiazole kinase | |||
| 4550 | R | HpyP30ORFTP (97% identity) | CTANNNNNNNNTTG | Hpyfe6ORF4560P |
| 4555 | S | S.Hpyfe6ORF4260P (100% identity) | CTANNNNNNNNTTG | S.Hpyfe6ORF4560P |
| 4560 | M | M.HpyTW09ORF4160P (97% identity) | CTANNNNNNNNTTG | M.Hpyfe6ORF4560P |
| 4565 | phosphatase PAP2 family protein | |||
| 4820 | type I restriction endonuclease | |||
| 4825 | R | Hpyfe8ORF2045P (96% identity) | CCANNNNNNTC | Hpyfe6ORF4830P |
| 4830 | M | M.HpyCHN4ORF2250P (96% identity) | CCANNNNNNTC | M.Hpyfe6ORF4830P |
| 4835 | S | S.Hpyfe33ORF4885P (98% identity) | CCANNNNNNTC | S.Hpyfe6ORF4830P |
| 4845 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpyTW04ORF7130P (91% identity) | Hpyfe6ORF55P | |
| 60 | transcription termination factor NusA | |||
| 260 | ComF family protein | |||
| 265 | RM | Hpyfe86ORF290P (98% identity) | CYANNNNNNTTC | Hpyfe6ORF265P |
| 270 | S | S.Hpyfe77ORF260P (89% identity) | S.Hpyfe6ORF265P | |
| 275 | DNA polymerase I | |||
| 1375 | serine O-acetyltransferase | |||
| 1380 | R | Hpy24AORFLP (94% identity) | CATG | Hpyfe6ORF1385P |
| 1385 | M | M.HpyIceORFOP (96% identity) | CATG | M.Hpyfe6ORF1385P |
| 1390 | HAD family hydrolase | |||
| 1840 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1845 | M | M.Hpyfe39ORF1895P (99% identity) | GCGC | M.Hpyfe6ORF1845P |
| 1850 | 144 aa hypothetical protein | |||
| 2020 | Laminin subunit alpha-2 precursor | |||
| 2025 | R | Hpyfe93ORF2050P (99% identity) | TCNNGA | Hpyfe6ORF2030P |
| 2030 | M | M.Hpyfe92ORF2245P (99% identity) | TCNNGA | M.Hpyfe6ORF2030P |
| 2035 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2675 | ATP-dependent helicase | |||
| 2680 | M | M.HpyCA2IX (97% identity) | GTNNAC | M.Hpyfe6ORF2680P |
| 2685 | R | Hpyfe97ORF2880P (99% identity) | GTNNAC | Hpyfe6ORF2680P |
| 2690 | flagellar hook protein FlgE | |||
| 2875 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2880 | M | M.Hpy199ORFQP (94% identity) | GTAC | M.Hpyfe6ORF2880P |
| 2885 | R | Hpyfe64ORF5220P (95% identity) | GTAC | Hpyfe6ORF2880P |
| 2890 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3685 | (Fe-S)-binding protein | |||
| 3690 | RM | HpySG05ORF3390P (90% identity) | Hpyfe6ORF3690P | |
| 3695 | outer membrane protein | |||
| 4710 | catalase | |||
| 4715 | R | Hpyfe39ORF4875P (100% identity) | ACGT | Hpyfe6ORF4720P |
| 4720 | M | M.HpySG18ORF4970P (98% identity) | ACGT | M.Hpyfe6ORF4720P |
| 4725 | GIY-YIG nuclease family protein | |||
| 4720 | DNA cytosine methyltransferase | |||
| 4725 | R | HpyUM023ORF5735P (100% identity) | ACNGT | Hpyfe6ORF4730P |
| 4730 | M | M.HpyJ002VIII (99% identity) | ACNGT | M.Hpyfe6ORF4730P |
| 4735 | translational GTPase TypA | |||
| 4740 | lipopolysaccharide heptosyltransferase family | |||
| 4745 | M | M.HpyK050IV (98% identity) | ATTAAT | M.Hpyfe6ORF4745P |
| 4750 | Hop family outer membrane protein HopJ/HopK | |||
| 5465 | 125 aa hypothetical protein | |||
| 5470 | M | M.HpyM6CORFIP (99% identity) | CTNAG | M.Hpyfe6ORF5470P |
| 5475 | R | Hpyfe112ORF5665P (98% identity) | CTNAG | Hpyfe6ORF5470P |
| 5480 | polysaccharide deacetylase | |||
| 5715 | AAA family ATPase | |||
| 5720 | M | M.HpyKG6VI (99% identity) | CCGG | M.Hpyfe6ORF5720P |
| 5725 | R | HpyP004IVP (98% identity) | CCGG | Hpyfe6ORF5720P |
| 5730 | exodeoxyribonuclease VII large subunit | |||
| 6525 | alpha-1,2-fucosyltransferase | |||
| 6530 | M | M.Hpyfe24ORF6785P (98% identity) | GATC | M.Hpyfe6ORF6530P |
| 6535 | R | HpySW34IIP (84% identity) | GATC | Hpyfe6ORF6530P |
| 6545 | ACP S-malonyltransferase | |||
| 6710 | sodium/proline symporter PutP | |||
| 6715 | M | M.Hpyfe39ORF7020P (100% identity) | CCTTC | M.Hpyfe6ORF6715P |
| 6720 | R | Hpy3ORF1470P (98% identity) | CCTTC | Hpyfe6ORF6715P |
| 6725 | HNH endonuclease | |||
| 6720 | restriction endonuclease | |||
| 6725 | R | HpyU425VP (95% identity) | CCTC | Hpyfe6ORF6730P |
| 6730 | M | M2.HpyOK310ORFLP (99% identity) | CCTC | M1.Hpyfe6ORF6730P |
| 6735 | M | M1.HpySG17III (98% identity) | CCTC | M2.Hpyfe6ORF6730P |
| 6740 | agmatine deiminase | |||
| 6780 | S41 family peptidase | |||
| 6785 | R | HpyMM05VP (81% identity) | GANTC | Hpyfe6ORF6790P |
| 6790 | M | M.HpyT027IX (98% identity) | GANTC | M.Hpyfe6ORF6790P |
| 6795 | DNA methyltransferase | |||
| 6795 | DNA methyltransferase | |||
| 6800 | RM | HpyOK03ORFKP (83% identity) | Hpyfe6ORF6800P | |
| 6805 | carboxylating nicotinate-nucleotide | |||
| 6855 | copper response regulator transcription factor | |||
| 6860 | R | Hpy3sORF7330P (99% identity) | GAAGA | Hpyfe6ORF6865P |
| 6865 | M | M1.Hpyfe23ORF7115P (100% identity) | GAAGA | M1.Hpyfe6ORF6865P |
| 6870 | M | M2.Hpyfe82ORF7075P (100% identity) | GAAGA | M2.Hpyfe6ORF6865P |
| 6875 | site-specific DNA-methyltransferase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpySP204ORF7250P (93% identity) | M.Hpyfe6ORF40P | |
| 50 | R | Hpyfe2ORF40P (96% identity) | Hpyfe6ORF40P | |
| 55 | class I SAM-dependent DNA methyltransferase | |||
| 605 | biotin synthase | |||
| 610 | R | Hpy115ORF4600P (94% identity) | Hpyfe6ORF615P | |
| 615 | M | M.HpyMA20ORF6580P (97% identity) | M.Hpyfe6ORF615P | |
| 620 | DNA/RNA non-specific endonuclease | |||
| 6870 | site-specific DNA-methyltransferase | |||
| 6875 | M | M.Hpyfe113ORF3760P (97% identity) | M.Hpyfe6ORF6875P | |
| 6880 | R | Hpyfe62ORF6920P (96% identity) | Hpyfe6ORF6875P | |
| 6885 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2920 | type I glutamate--ammonia ligase | |||
| 2925 | R | Hpyfe92GmrSD2P (91% identity) | Hpyfe6GmrSDP | |
| 2930 | 50S ribosomal protein L9 | |||
| 3500 | sel1 repeat family protein | |||
| 3505 | R | HpySG33GmrSD2P (95% identity) | Hpyfe6GmrSD2P | |
| 3510 | NAD(P)H-dependent oxidoreductase | |||