Helicobacter pylori Hpfe0007 |
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Putative Helicobacter pylori Hpfe0007 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,562,288 bp
GenBank #: CP094167
REBASE acronym: Hpyfe7
Org_num: 57270
All begin MPG42_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2965 | type I restriction endonuclease | |||
| 2970 | M | M.Hpyfe56ORF3060P (96% identity) | CTANNNNNNNNTGT | M.Hpyfe7ORF2970P |
| 2975 | S | S.Hpy417ORF3820P (96% identity) | CTANNNNNNNNTGT | S.Hpyfe7ORF2970P |
| 2980 | R | HpyK049ORF2670P (97% identity) | CTANNNNNNNNTGT | Hpyfe7ORF2970P |
| 2985 | hydroxyethylthiazole kinase | |||
| 4870 | motility associated factor glycosyltransferase | |||
| 4875 | R | HpyCA1ORF4770P (88% identity) | GCANNNNNNTTA | Hpyfe7ORF4880P |
| 4880 | M | M.Hpyfe125ORF2620P (98% identity) | GCANNNNNNTTA | M.Hpyfe7ORF4880P |
| 4885 | S | S.HpyOK304ORFTP (98% identity) | GCANNNNNNTTA | S.Hpyfe7ORF4880P |
| 4895 | RNA degradosome polyphosphate kinase | |||
| 7490 | M48 family metallopeptidase | |||
| 7495 | R | Hpyfe125ORF7440P (99% identity) | CCANNNNNNCTT | Hpyfe7ORF7500P |
| 7500 | M | M.Hpyfe125ORF7440P (99% identity) | CCANNNNNNCTT | M.Hpyfe7ORF7500P |
| 7505 | S | S.HpyDU15ORF7105P (97% identity) | CCANNNNNNCTT | S.Hpyfe7ORF7500P |
| 7510 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | type III restriction-modification system | |||
| 50 | RM | HpyMKF10ORF1454P (93% identity) | Hpyfe7ORF50P | |
| 55 | transcription termination factor NusA | |||
| 255 | ComF family protein | |||
| 260 | RM | Hpyfe125ORF260P (99% identity) | CYANNNNNNTTC | Hpyfe7ORF260P |
| 265 | S | S1.Hpyfe125ORF260P (99% identity) | S1.Hpyfe7ORF260P | |
| 270 | S | S2.Hpyfe13ORF270P (97% identity) | S2.Hpyfe7ORF260P | |
| 275 | DNA polymerase I | |||
| 1375 | serine O-acetyltransferase | |||
| 1380 | R | HpyPF57IP (97% identity) | CATG | Hpyfe7ORF1385P |
| 1385 | M | M.HpyUM032I (98% identity) | CATG | M.Hpyfe7ORF1385P |
| 1390 | HAD family hydrolase | |||
| 1840 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1845 | M | M.HpyAR8XIV (99% identity) | GCGC | M.Hpyfe7ORF1845P |
| 1850 | 144 aa hypothetical protein | |||
| 2025 | Laminin subunit alpha-2 precursor | |||
| 2030 | R | Hpyfe93ORF2050P (100% identity) | TCNNGA | Hpyfe7ORF2035P |
| 2035 | M | M.Hpyfe88ORF2055P (99% identity) | TCNNGA | M.Hpyfe7ORF2035P |
| 2040 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2685 | ATP-dependent helicase | |||
| 2690 | M | M.Hpyfe86ORF2720P (96% identity) | GTNNAC | M.Hpyfe7ORF2690P |
| 2695 | R | HpyTW10ORF4430P (98% identity) | GTNNAC | Hpyfe7ORF2690P |
| 2700 | flagellar hook protein FlgE | |||
| 3790 | (Fe-S)-binding protein | |||
| 3795 | RM | Hpyfe13ORF3910P (93% identity) | Hpyfe7ORF3795P | |
| 3800 | outer membrane protein | |||
| 4680 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4685 | R | Hpyfe125ORF2815P (100% identity) | GTAC | Hpyfe7ORF4690P |
| 4690 | M | M.Hpyfe102ORF4830P (99% identity) | GTAC | M.Hpyfe7ORF4690P |
| 4695 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4775 | catalase | |||
| 4780 | R | Hpyfe125ORF2720P (100% identity) | ACNGT | Hpyfe7ORF4785P |
| 4785 | M | M.Hpyfe13ORF4960P (99% identity) | ACNGT | M.Hpyfe7ORF4785P |
| 4790 | translational GTPase TypA | |||
| 4795 | lipopolysaccharide heptosyltransferase family | |||
| 4800 | M | M.Hpy256ORFFP (99% identity) | ATTAAT | M.Hpyfe7ORF4800P |
| 4805 | Hop family outer membrane protein HopJ/HopK | |||
| 5305 | group I intron-associated PD-(D/E)XK | |||
| 5310 | M | M.Hpyfe125ORF2185P (100% identity) | GCNGC | M.Hpyfe7ORF5310P |
| 5315 | translation elongation factor 4 | |||
| 5740 | AAA family ATPase | |||
| 5745 | M | M.Hpyfe93ORF5875P (100% identity) | CCGG | M.Hpyfe7ORF5745P |
| 5750 | R | Hpyfe125ORF1750P (100% identity) | CCGG | Hpyfe7ORF5745P |
| 5755 | 203 aa hypothetical protein | |||
| 5755 | 203 aa hypothetical protein | |||
| 5760 | M | M.Hpyfe125ORF1735P (99% identity) | TCGA | M.Hpyfe7ORF5760P |
| 5765 | exodeoxyribonuclease VII large subunit | |||
| 6565 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6570 | M | M.HpyPF57ORF690P (97% identity) | GATC | M.Hpyfe7ORF6570P |
| 6575 | HTH domain-containing protein | |||
| 6765 | sodium/proline symporter PutP | |||
| 6770 | M | M2.Hpyfe125ORF730P (99% identity) | M1.Hpyfe7ORF6770P | |
| 6775 | M | M1.Hpyfe125ORF730P (100% identity) | CCTC | M2.Hpyfe7ORF6770P |
| 6780 | agmatine deiminase | |||
| 6825 | DNA methyltransferase | |||
| ??? | RM | HpyK028ORF270P (94% identity) | GGWTAA | Hpyfe7ORF6835P |
| 6840 | carboxylating nicotinate-nucleotide | |||
| 6895 | site-specific DNA-methyltransferase | |||
| 6900 | R | Hpyfe125ORF6850P (100% identity) | GATATC | Hpyfe7ORF6905P |
| 6905 | M | M.Hpyfe125ORF6850P (100% identity) | GATATC | M.Hpyfe7ORF6905P |
| 6910 | site-specific DNA-methyltransferase | |||
| 7385 | 107 aa hypothetical protein | |||
| 7390 | R | Hpyfe125ORF7335P (100% identity) | TGCA | Hpyfe7ORF7395P |
| 7395 | M | M.Hpyfe125ORF7335P (100% identity) | TGCA | M.Hpyfe7ORF7395P |
| 7400 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyV005ORF7210P (97% identity) | M.Hpyfe7ORF40P | |
| 45 | R | Hpyfe3ORF40P (97% identity) | Hpyfe7ORF40P | |
| 50 | class I SAM-dependent DNA methyltransferase | |||
| 595 | biotin synthase | |||
| 600 | R | HpyK034ORF6455P (95% identity) | Hpyfe7ORF605P | |
| 605 | M | M.Hpyfe103ORF630P (97% identity) | M.Hpyfe7ORF605P | |
| 610 | ABC transporter ATP-binding protein/permease | |||
| 6890 | copper response regulator transcription factor | |||
| ??? | M | M.Hpyfe65ORF6910P (98% identity) | M.Hpyfe7ORF6895P | |
| 6900 | EcoRV family type II restriction endonuclease | |||
| 6905 | Dam family site-specific | |||
| 6910 | site-specific DNA-methyltransferase | |||
| 6915 | R | HpyCHN4XIP (96% identity) | Hpyfe7ORF6895P | |
| 6920 | rod shape-determining protein MreC | |||
| 6905 | Dam family site-specific | |||
| ??? | M | M.Hpyfe7ORF6895P (57% identity) | M.Hpyfe7ORFAP | |
| 6915 | DEAD/DEAH box helicase family protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4045 | NAD(P)H-dependent oxidoreductase | |||
| 4050 | R | Hpyfe125GmrSDP (99% identity) | Hpyfe7GmrSD2P | |
| 4055 | sel1 repeat family protein | |||
| 4640 | 50S ribosomal protein L9 | |||
| 4645 | R | HpyK021GmrSDP (80% identity) | Hpyfe7GmrSDP | |
| 4650 | type I glutamate--ammonia ligase | |||