Helicobacter pylori Hpfe0008 |
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Putative Helicobacter pylori Hpfe0008 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,607,782 bp
GenBank #: CP094179
REBASE acronym: Hpyfe8
Org_num: 57271
All begin MPG00_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2030 | RNA degradosome polyphosphate kinase | |||
| 2040 | S | S.HpyT030ORF2250P (99% identity) | GACNNNNNTTT | S.Hpyfe8ORF2045P |
| 2045 | M | M.HpyK035ORF2270P (97% identity) | GACNNNNNTTT | M.Hpyfe8ORF2045P |
| 2050 | R | HpyJ016ORF4400P (70% identity) | GACNNNNNTTT | Hpyfe8ORF2045P |
| 2055 | type I restriction endonuclease | |||
| 6840 | M48 family metallopeptidase | |||
| 6845 | R | HpyK044ORF555P (96% identity) | Hpyfe8ORF6850P | |
| 6850 | M | M.Hpyfe123ORF7730P (96% identity) | M.Hpyfe8ORF6850P | |
| 6855 | S | S.Hpyfe40ORF7560P (33% identity) | S1.Hpyfe8ORF6850P | |
| 6860 | S | S.HpyCHN7V (51% identity) | S2.Hpyfe8ORF6850P | |
| 6865 | 61 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 140 | agmatine/peptidylarginine deiminase | |||
| 145 | M | M1.HpyK008IV (98% identity) | CCTC | M1.Hpyfe8ORF145P |
| 150 | M | M2.HpyJ017VIIP (98% identity) | CCTC | M2.Hpyfe8ORF145P |
| 155 | R | HpyTW06VP (97% identity) | CCTC | Hpyfe8ORF145P |
| 160 | site-specific DNA-methyltransferase | |||
| 155 | HNH endonuclease | |||
| 160 | M | M.HpySG13XII (99% identity) | GTSAC | M.Hpyfe8ORF160P |
| 165 | R | HpysHP34ORF2390P (100% identity) | GTSAC | Hpyfe8ORF160P |
| 170 | DNA cytosine methyltransferase | |||
| 345 | ACP S-malonyltransferase | |||
| 355 | R | HpyTW22VIIIP (94% identity) | GATC | Hpyfe8ORF360P |
| 360 | M | M.HpyGU71CORFVP (98% identity) | GATC | M.Hpyfe8ORF360P |
| 365 | alpha-1,2-fucosyltransferase | |||
| 745 | elongation factor P | |||
| 750 | M | M1.HpyTW10ORF970P (98% identity) | M1.Hpyfe8ORF750P | |
| 755 | M | M2.Hpyfe49ORF6405P (98% identity) | M2.Hpyfe8ORF750P | |
| 760 | R | R2.Hpyfe70ORF6305P (97% identity) | R1.Hpyfe8ORF750P | |
| 765 | R | R2.Hpy1888AORF2090P (97% identity) | R2.Hpyfe8ORF750P | |
| 770 | pseudaminic acid synthase | |||
| 1175 | exodeoxyribonuclease VII large subunit | |||
| 1180 | M | M.Hpy464ORF1300P (98% identity) | TCGA | M.Hpyfe8ORF1180P |
| 1185 | 203 aa hypothetical protein | |||
| 1185 | 203 aa hypothetical protein | |||
| 1190 | R | HpyK052IVP (98% identity) | CCGG | Hpyfe8ORF1195P |
| 1195 | M | M.Hpyfe104ORF3870P (99% identity) | CCGG | M.Hpyfe8ORF1195P |
| 1200 | AAA family ATPase | |||
| 2125 | Hop family outer membrane protein HopJ/HopK | |||
| 2130 | M | M.HpyJ029IX (99% identity) | ATTAAT | M.Hpyfe8ORF2130P |
| 2135 | lipopolysaccharide heptosyltransferase family | |||
| 2140 | translational GTPase TypA | |||
| 2145 | M | M.Hpyfe15ORF4785P (99% identity) | ACNGT | M.Hpyfe8ORF2145P |
| 2150 | R | HpyMA08ORF2310P (99% identity) | ACNGT | Hpyfe8ORF2145P |
| 2155 | DNA cytosine methyltransferase | |||
| 2465 | ABC transporter permease/substrate-binding | |||
| 2470 | M | M.Hpyfe78ORF3885P (100% identity) | CGWCG | M.Hpyfe8ORF2470P |
| 2475 | R | HpyK118VIP (100% identity) | CGWCG | Hpyfe8ORF2470P |
| 2480 | osmoprotection protein | |||
| 2620 | cadmium-translocating P-type ATPase | |||
| 2625 | M | M.Hpyfe82ORF3255P (99% identity) | M.Hpyfe8ORF2625P | |
| 2630 | R | Hpyfe82ORF3255P (95% identity) | Hpyfe8ORF2625P | |
| 2635 | outer membrane beta-barrel protein HofF | |||
| 3145 | (Fe-S)-binding protein | |||
| 3150 | RM | HpyJ021ORF3360P (92% identity) | Hpyfe8ORF3150P | |
| 3155 | 396 aa hypothetical protein | |||
| 4005 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4010 | R | Hpyfe103ORF2920P (97% identity) | GTAC | Hpyfe8ORF4015P |
| 4015 | M | M.Hpyfe97ORF3090P (99% identity) | GTAC | M.Hpyfe8ORF4015P |
| 4020 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4215 | flagellar hook protein FlgE | |||
| 4220 | R | HpyV007IXP (96% identity) | GTNNAC | Hpyfe8ORF4225P |
| 4225 | M | M.Hpyfe70ORF2820P (98% identity) | GTNNAC | M.Hpyfe8ORF4225P |
| 4230 | ATP-dependent helicase | |||
| 4865 | acetyl-CoA carboxylase biotin carboxylase | |||
| 4870 | M | M.Hpy4105ORFPP (99% identity) | TCNNGA | M.Hpyfe8ORF4870P |
| 4875 | R | HpyOK312ORFOP (100% identity) | TCNNGA | Hpyfe8ORF4870P |
| 4880 | Laminin subunit alpha-2 precursor | |||
| 5050 | 144 aa hypothetical protein | |||
| 5055 | M | M.HpyTN2ORF11400P (98% identity) | GCGC | M.Hpyfe8ORF5055P |
| 5060 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 5325 | Hop family adhesin HopQ | |||
| ??? | M | M.Hpyfe10ORF1600P (94% identity) | M.Hpyfe8ORF5330P | |
| 5335 | R | Hpyfe58ORF1625P (98% identity) | Hpyfe8ORF5330P | |
| 5340 | purine-nucleoside phosphorylase | |||
| 5505 | HAD family hydrolase | |||
| 5510 | M | M.Hpy4105ORFRP (97% identity) | CATG | M.Hpyfe8ORF5510P |
| 5515 | R | Hpyfe76ORF1420P (99% identity) | CATG | Hpyfe8ORF5510P |
| 5520 | serine O-acetyltransferase | |||
| 6205 | S41 family peptidase | |||
| ??? | RM | HpyTW17ORF260P (87% identity) | Hpyfe8ORF6210P | |
| 6225 | carboxylating nicotinate-nucleotide | |||
| 6735 | 160 aa hypothetical protein | |||
| 6740 | R | Hpy72ORF1499P (98% identity) | TGCA | Hpyfe8ORF6745P |
| 6745 | M | M.HpyTW05V (99% identity) | TGCA | M.Hpyfe8ORF6745P |
| 6750 | 67 aa hypothetical protein | |||
| 6940 | 714 aa hypothetical protein | |||
| 6945 | RM | HpyJA107XV (92% identity) | Hpyfe8ORF6945P | |
| 6950 | transcription termination factor NusA | |||
| 7155 | ComF family protein | |||
| 7160 | RM | Hpyfe99ORF280P (97% identity) | CYANNNNNNTTC | Hpyfe8ORF7160P |
| 7165 | S | S.HpySW22ORF7180P (92% identity) | S.Hpyfe8ORF7160P | |
| 7170 | DNA polymerase I | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10 | biotin synthase | |||
| 15 | R | HpyK23ORF6470P (95% identity) | Hpyfe8ORF20P | |
| 20 | M | M.HpyK101ORF6705P (97% identity) | M.Hpyfe8ORF20P | |
| 25 | DNA/RNA non-specific endonuclease | |||
| 6920 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpyfe108ORF40P (96% identity) | M.Hpyfe8ORF6925P | |
| 6935 | R | Hpyfe3ORF40P (97% identity) | Hpyfe8ORF6925P | |
| 6940 | 714 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3375 | NAD(P)H-dependent oxidoreductase | |||
| 3380 | R | HpyV002GmrSD2P (96% identity) | Hpyfe8GmrSD2P | |
| 3385 | sel1 repeat family protein | |||
| 3965 | 50S ribosomal protein L9 | |||
| 3970 | R | Hpyfe33GmrSDP (99% identity) | Hpyfe8GmrSDP | |
| 3975 | type I glutamate--ammonia ligase | |||