Helicobacter pylori Hpfe0011 |
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Putative Helicobacter pylori Hpfe0011 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,621,962 bp
GenBank #: CP094165
REBASE acronym: Hpyfe11
Org_num: 57272
All begin MPG18_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2845 | RNA degradosome polyphosphate kinase | |||
| 2855 | S | S.HpyV005ORF2190P (98% identity) | CACNNNNNTAY | S.Hpyfe11ORF2860P |
| 2860 | M | M.HpyF233ORFNP (98% identity) | CACNNNNNTAY | M.Hpyfe11ORF2860P |
| 2865 | type I restriction endonuclease subunit R | |||
| 5210 | hydroxyethylthiazole kinase | |||
| 5215 | R | Hpyfe56ORF3060P (97% identity) | Hpyfe11ORF5225P | |
| 5220 | S | S.HpyOK68ORFBP (98% identity) | S.Hpyfe11ORF5225P | |
| 5225 | M | M.HpyL030XIV (87% identity) | M.Hpyfe11ORF5225P | |
| 5230 | type I restriction endonuclease | |||
| 7745 | M48 family metallopeptidase | |||
| 7750 | R | Hpyfe70ORF7585P (96% identity) | Hpyfe11ORF7765P | |
| 7755 | transposase | |||
| 7760 | IS607 family transposase | |||
| 7765 | M | M.Hpyfe24ORF7655P (94% identity) | M.Hpyfe11ORF7765P | |
| 7770 | S | S.HpyC014XIII (93% identity) | S.Hpyfe11ORF7765P | |
| 7775 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | 717 aa hypothetical protein | |||
| 55 | RM | Hpyfe39ORF55P (90% identity) | Hpyfe11ORF55P | |
| 60 | transcription termination factor NusA | |||
| 125 | outer membrane protein | |||
| 130 | R | Hpyfe57ORF140P (99% identity) | CCATC | Hpyfe11ORF135P |
| 135 | M | M1.Hpyfe40ORF140P (99% identity) | CCATC | M1.Hpyfe11ORF135P |
| 140 | M | M2.Hpyfe88ORF155P (99% identity) | CCATC | M2.Hpyfe11ORF135P |
| 145 | LptF/LptG family permease | |||
| 275 | VRR-NUC domain-containing protein | |||
| 280 | R | Hpyfe61ORF300P (64% identity) | Hpyfe11ORF290BP | |
| 285 | R | Hpyfe78ORF290P (31% identity) | Hpyfe11ORF290AP | |
| 290 | M | M.Hpyfe61ORF300P (99% identity) | M.Hpyfe11ORF290P | |
| 295 | restriction endonuclease subunit S | |||
| 305 | 73 aa hypothetical protein | |||
| 310 | S | S.Hpyfe79ORF270BP (97% identity) | S.Hpyfe11ORF310P | |
| 315 | DNA polymerase I | |||
| 765 | agmatine/peptidylarginine deiminase | |||
| 770 | M | M2.Hpyfe29ORF6800P (55% identity) | M1.Hpyfe11ORF770P | |
| 775 | M | M2.HpyHP32IVP (99% identity) | M2.Hpyfe11ORF770P | |
| 780 | sodium/proline symporter PutP | |||
| 1125 | ACP S-malonyltransferase | |||
| 1135 | R | Hpyfe23ORF6770P (97% identity) | GATC | Hpyfe11ORF1140P |
| 1140 | M | M.HpySORF465P (98% identity) | GATC | M.Hpyfe11ORF1140P |
| 1145 | alpha-1,2-fucosyltransferase | |||
| 1530 | 95 aa hypothetical protein | |||
| 1535 | R | R1.HpyV006ORF900P (99% identity) | R1.Hpyfe11ORF1535P | |
| 1540 | R | R2.HpyK115ORF920P (98% identity) | R2.Hpyfe11ORF1535P | |
| 1545 | pseudaminic acid synthase | |||
| 1960 | exodeoxyribonuclease VII large subunit | |||
| 1965 | M | M.HpyK051VIII (99% identity) | TCGA | M.Hpyfe11ORF1965P |
| 1970 | 204 aa hypothetical protein | |||
| 1970 | 204 aa hypothetical protein | |||
| 1975 | R | HpyHK711ORFE1P (96% identity) | CCGG | Hpyfe11ORF1980P |
| 1980 | M | M.HpyMA08III (98% identity) | CCGG | M.Hpyfe11ORF1980P |
| 1985 | AAA family ATPase | |||
| 2215 | polysaccharide deacetylase | |||
| 2220 | R | HpyID3VIIIP (93% identity) | CTNAG | Hpyfe11ORF2225P |
| 2225 | M | M.HpyT026VII (98% identity) | CTNAG | M.Hpyfe11ORF2225P |
| 2230 | 125 aa hypothetical protein | |||
| 3310 | ATP-dependent helicase | |||
| 3315 | M | M.Hpyfe38ORF2685P (98% identity) | GTNNAC | M.Hpyfe11ORF3315P |
| 3320 | R | HpyMA21XIIIP (97% identity) | GTNNAC | Hpyfe11ORF3315P |
| 3325 | flagellar hook protein FlgE | |||
| 3510 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3515 | M | M.HpyK035III (99% identity) | GTAC | M.Hpyfe11ORF3515P |
| 3520 | R | HpyF75ORF880P (96% identity) | GTAC | Hpyfe11ORF3515P |
| 3525 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4290 | 3-5 exonuclease | |||
| 4295 | R | HpyTN2ORF7450P (99% identity) | Hpyfe11ORF4300P | |
| 4300 | M | M.HpyGC26ORFLP (99% identity) | M.Hpyfe11ORF4300P | |
| 4305 | 3-5 exonuclease | |||
| 4380 | 59 aa hypothetical protein | |||
| 4385 | RM | HpyJ029ORF3440P (93% identity) | Hpyfe11ORF4385P | |
| 4390 | (Fe-S)-binding protein | |||
| 5385 | catalase | |||
| 5390 | R | Hpyfe126ORF4870P (98% identity) | ACGT | Hpyfe11ORF5395P |
| 5395 | M | M.Hpyfe13ORF4950P (99% identity) | ACGT | M.Hpyfe11ORF5395P |
| 5400 | translational GTPase TypA | |||
| 5405 | lipopolysaccharide heptosyltransferase family | |||
| 5410 | M | M.HpyGU62AORFQP (98% identity) | ATTAAT | M.Hpyfe11ORF5410P |
| 5415 | Hop family outer membrane protein HopJ/HopK | |||
| 5770 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5775 | M | M.HpyOK95ORFSP (100% identity) | TCNNGA | M.Hpyfe11ORF5775P |
| 5780 | R | Hpy72ORF1040P (98% identity) | TCNNGA | Hpyfe11ORF5775P |
| 5785 | Laminin subunit alpha-2 precursor | |||
| 5960 | 144 aa hypothetical protein | |||
| 5965 | M | M.Hpyfe4ORF1870P (97% identity) | GCGC | M.Hpyfe11ORF5965P |
| 5970 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6410 | HAD family hydrolase | |||
| 6415 | M | M.Hpyfe36ORF1425P (98% identity) | CATG | M.Hpyfe11ORF6415P |
| 6420 | R | Hpyfe62ORF1410P (96% identity) | CATG | Hpyfe11ORF6415P |
| 6425 | serine O-acetyltransferase | |||
| 7115 | DNA methyltransferase | |||
| 7120 | R | Hpybs1ORFNP (98% identity) | GANTC | Hpyfe11ORF7125P |
| 7125 | M | M.Hpyfe89ORF7150P (100% identity) | GANTC | M.Hpyfe11ORF7125P |
| 7130 | N-6 DNA methylase | |||
| 7125 | site-specific DNA-methyltransferase | |||
| 7130 | RM | HpyK26ORF275P (91% identity) | Hpyfe11ORF7130P | |
| 7135 | carboxylating nicotinate-nucleotide | |||
| 7185 | copper response regulator transcription factor | |||
| 7190 | R | HpyQ59ORFDP (83% identity) | Hpyfe11ORF7190P | |
| 7195 | EcoRV family type II restriction endonuclease | |||
| 7190 | restriction endonuclease subunit R | |||
| 7195 | R | HpySG13ORF210P (99% identity) | GATATC | Hpyfe11ORF7200P |
| 7200 | M | M.HpySG33ORF370P (98% identity) | GATATC | M.Hpyfe11ORF7200P |
| 7205 | site-specific DNA-methyltransferase | |||
| 7650 | 88 aa hypothetical protein | |||
| 7655 | R | HpyOK316ORFKP (98% identity) | TGCA | Hpyfe11ORF7660P |
| 7660 | M | M.HpyK28XII (100% identity) | TGCA | M.Hpyfe11ORF7660P |
| 7665 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyCHN5ORF7455P (94% identity) | M.Hpyfe11ORF40P | |
| 45 | R | HpyTW04ORF7140P (97% identity) | Hpyfe11ORF40P | |
| 50 | 717 aa hypothetical protein | |||
| 640 | biotin synthase | |||
| 645 | R | Hpyfe92ORF650P (95% identity) | Hpyfe11ORF650P | |
| 650 | M | M.HpyGU83AORFWP (98% identity) | M.Hpyfe11ORF650P | |
| 655 | DNA/RNA non-specific endonuclease | |||
| 7200 | Dam family site-specific | |||
| ??? | M | M.Hpyfe49ORF7135P (97% identity) | M.Hpyfe11ORF7205P | |
| 7210 | R | Hpyfe80ORF6895P (95% identity) | Hpyfe11ORF7205P | |
| 7215 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3555 | type I glutamate--ammonia ligase | |||
| 3560 | R | HpyK020GmrSDP (89% identity) | Hpyfe11GmrSDP | |
| 3565 | 50S ribosomal protein L9 | |||
| 4135 | SEL1-like repeat protein | |||
| 4140 | R | HpySG03GmrSD2P (97% identity) | Hpyfe11GmrSD2P | |
| 4145 | NAD(P)H-dependent oxidoreductase | |||