Helicobacter pylori Hpfe0012 |
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Putative Helicobacter pylori Hpfe0012 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,627,796 bp
GenBank #: CP094164
REBASE acronym: Hpyfe12
Org_num: 57273
All begin MPG84_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2975 | phosphatase PAP2 family protein | |||
| 2980 | M | M.HpySG33III (96% identity) | CCANNNNNNNTTG | M.Hpyfe12ORF2980P |
| 2985 | S | S.HpyOK95ORFOP (98% identity) | CCANNNNNNNTTG | S.Hpyfe12ORF2980P |
| 2990 | R | HpyT028XVP (96% identity) | CCANNNNNNNTTG | Hpyfe12ORF2980P |
| 2995 | hydroxyethylthiazole kinase | |||
| 3270 | cadmium-translocating P-type ATPase | |||
| 3275 | S | S.Hpy017II (96% identity) | CRTANNNNNNNTC | S.Hpyfe12ORF3275P |
| 3280 | outer membrane beta-barrel protein HofF | |||
| 4855 | motility associated factor glycosyltransferase | |||
| ??? | R | HpyJA105ORF5230P (93% identity) | CTANNNNNNTC | Hpyfe12ORF4875P |
| 4875 | M | M.HpyK045ORF4015P (97% identity) | CTANNNNNNTC | M.Hpyfe12ORF4875P |
| 4880 | S | S.Hpyfe49ORF4945P (98% identity) | CTANNNNNNTC | S.Hpyfe12ORF4875P |
| 4890 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 713 aa hypothetical protein | |||
| 60 | RM | Hpyfe124ORF55P (66% identity) | Hpyfe12ORF60P | |
| 65 | transcription termination factor NusA | |||
| 130 | outer membrane protein | |||
| 135 | R | Hpyfe57ORF140P (98% identity) | CCATC | Hpyfe12ORF140P |
| 140 | M | M1.Hpyfe75ORF215P (100% identity) | CCATC | M1.Hpyfe12ORF140P |
| 145 | M | M2.Hpyfe88ORF155P (100% identity) | CCATC | M2.Hpyfe12ORF140P |
| 150 | LptF/LptG family permease | |||
| 275 | ComF family protein | |||
| 280 | RM | HpyQ55ORFTP (99% identity) | CYANNNNNNTTC | Hpyfe12ORF280P |
| 285 | S | S.HpyH025ORF7475P (94% identity) | S.Hpyfe12ORF280P | |
| 290 | DNA polymerase I | |||
| 1395 | serine O-acetyltransferase | |||
| 1400 | R | Hpyfe106ORF1405P (99% identity) | CATG | Hpyfe12ORF1405P |
| 1405 | M | M.Hpyfe59ORF1420P (99% identity) | CATG | M.Hpyfe12ORF1405P |
| 1410 | HAD family hydrolase | |||
| 1845 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1850 | M | M.Hpyfe21ORF6045P (96% identity) | GCGC | M.Hpyfe12ORF1850P |
| 1855 | R | Hpyfe75ORF1935P (100% identity) | GCGC | Hpyfe12ORF1850P |
| 1860 | IS607 family transposase | |||
| 2055 | Laminin subunit alpha-2 precursor | |||
| 2060 | R | Hpyfe93ORF2050P (100% identity) | TCNNGA | Hpyfe12ORF2065P |
| 2065 | M | M.HpyTW09II (100% identity) | TCNNGA | M.Hpyfe12ORF2065P |
| 2070 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2710 | ATP-dependent helicase | |||
| 2715 | M | M.Hpyfe70ORF2820P (97% identity) | GTNNAC | M.Hpyfe12ORF2715P |
| 2720 | R | Hpyfe54ORF2745P (95% identity) | GTNNAC | Hpyfe12ORF2715P |
| 2725 | flagellar hook protein FlgE | |||
| 3790 | (Fe-S)-binding protein | |||
| 3795 | RM | Hpyfe61ORF4005P (93% identity) | Hpyfe12ORF3795P | |
| 3800 | outer membrane protein | |||
| 4650 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4655 | R | HpyJA105IXP (84% identity) | GTAC | Hpyfe12ORF4660P |
| 4660 | M | M.Hpyfe120ORF2885P (99% identity) | GTAC | M.Hpyfe12ORF4660P |
| 4665 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4745 | catalase | |||
| 4750 | R | Hpyfe113ORF5855P (98% identity) | ACGT | Hpyfe12ORF4755P |
| 4755 | M | M.HpyK101ORF2295P (98% identity) | ACGT | M.Hpyfe12ORF4755P |
| 4760 | GIY-YIG nuclease family protein | |||
| 4755 | DNA cytosine methyltransferase | |||
| 4760 | R | HpyT029ORF4490P (96% identity) | ACNGT | Hpyfe12ORF4765P |
| 4765 | M | M.Hpyfe118ORF4995P (99% identity) | ACNGT | M.Hpyfe12ORF4765P |
| 4770 | translational GTPase TypA | |||
| 4775 | lipopolysaccharide heptosyltransferase family | |||
| 4780 | M | M.HpyK119II (98% identity) | ATTAAT | M.Hpyfe12ORF4780P |
| 4785 | Hop family outer membrane protein HopJ/HopK | |||
| 5730 | AAA family ATPase | |||
| 5735 | M | M.Hpyfe61ORF5975P (95% identity) | CCGG | M.Hpyfe12ORF5735P |
| 5740 | R | HpyK116IIP (88% identity) | CCGG | Hpyfe12ORF5735P |
| 5745 | exodeoxyribonuclease VII large subunit | |||
| 6615 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6620 | M | M.Hpyfe63ORF6480P (96% identity) | GATC | M.Hpyfe12ORF6620P |
| 6625 | R | HpyK029VIIP (96% identity) | GATC | Hpyfe12ORF6620P |
| 6635 | ACP S-malonyltransferase | |||
| 7015 | DNA cytosine methyltransferase | |||
| 7020 | R | Hpyfe96ORF6885P (97% identity) | CCTC | Hpyfe12ORF7025P |
| 7025 | M | M1.Hpyfe123ORF6995P (99% identity) | CCTC | M1.Hpyfe12ORF7025P |
| 7030 | M | M2.Hpyfe107ORF7040P (99% identity) | CCTC | M2.Hpyfe12ORF7025P |
| 7035 | agmatine deiminase | |||
| 7080 | DNA methyltransferase | |||
| 7085 | R | Hpyfe75ORF7180P (100% identity) | GANTC | Hpyfe12ORF7090P |
| 7090 | M | M.Hpyfe75ORF7180P (100% identity) | GANTC | M.Hpyfe12ORF7090P |
| 7095 | 305 aa hypothetical protein | |||
| 7095 | 305 aa hypothetical protein | |||
| 7100 | RM | HpyJA111ORF265P (66% identity) | Hpyfe12ORF7100P | |
| 7105 | carboxylating nicotinate-nucleotide | |||
| 7625 | 177 aa hypothetical protein | |||
| 7630 | R | HpyT027XIVP (99% identity) | TGCA | Hpyfe12ORF7635P |
| 7635 | M | M.Hpyfe75ORF7750P (99% identity) | TGCA | M.Hpyfe12ORF7635P |
| 7640 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyPE115ORF7055P (89% identity) | M.Hpyfe12ORF40P | |
| 50 | R | HpyT029ORF7135P (97% identity) | Hpyfe12ORF40P | |
| 55 | 713 aa hypothetical protein | |||
| 620 | biotin synthase | |||
| 625 | R | HpyTW05ORF6615P (94% identity) | Hpyfe12ORF630P | |
| 630 | M | M.HpyTW04ORF6550P (97% identity) | M.Hpyfe12ORF630P | |
| 635 | DNA/RNA non-specific endonuclease | |||
| 7155 | copper response regulator transcription factor | |||
| ??? | M | M.HpyJA109ORF200P (97% identity) | M.Hpyfe12ORF7160P | |
| 7170 | R | Hpy458ORFMP (92% identity) | Hpyfe12ORF7160P | |
| 7175 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4025 | NAD(P)H-dependent oxidoreductase | |||
| 4030 | R | Hpyfe78GmrSD2P (95% identity) | Hpyfe12GmrSDP | |
| 4035 | sel1 repeat family protein | |||
| 4610 | 50S ribosomal protein L9 | |||
| 4615 | R | HpyK001GmrSDP (85% identity) | Hpyfe12GmrSD2P | |
| 4620 | type I glutamate--ammonia ligase | |||