Helicobacter pylori Hpfe0013 |
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Putative Helicobacter pylori Hpfe0013 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,613,739 bp
GenBank #: CP094163
REBASE acronym: Hpyfe13
Org_num: 57274
All begin MPG54_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4480 | outer membrane beta-barrel protein HofF | |||
| 4485 | S | S.HpyAs005ORF3725P (71% identity) | AACNNNNNNTGT | S.Hpyfe13ORF4485P |
| 4490 | cadmium-translocating P-type ATPase | |||
| 5050 | type I restriction endonuclease | |||
| 5055 | R | HpyOK314ORFTP (86% identity) | CTANNNNNNTC | Hpyfe13ORF5060P |
| 5060 | M | M.Hpyfe16ORF3160P (97% identity) | CTANNNNNNTC | M.Hpyfe13ORF5060P |
| 5065 | S | S.HpyCHN6ORF2240P (97% identity) | CTANNNNNNTC | S.Hpyfe13ORF5060P |
| 5075 | RNA degradosome polyphosphate kinase | |||
| 7735 | M48 family metallopeptidase | |||
| 7740 | R | HpyK048ORF7150P (97% identity) | Hpyfe13ORF7745P | |
| 7745 | M | M.Hpy18ORF6920P (97% identity) | M.Hpyfe13ORF7745P | |
| 7750 | S | S.HpyFD506ORFC1P (46% identity) | S.Hpyfe13ORF7745P | |
| 7755 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpyLI12XVI (75% identity) | Hpyfe13ORF55P | |
| 60 | transcription termination factor NusA | |||
| 265 | ComF family protein | |||
| 270 | RM | Hpyfe85ORF275P (98% identity) | CYANNNNNNTTC | Hpyfe13ORF270P |
| 275 | S | S.Hpyfe92ORF290AP (90% identity) | S1.Hpyfe13ORF270P | |
| 280 | S | S2.HpyOK301ORFFP (93% identity) | S2.Hpyfe13ORF270P | |
| 285 | DNA polymerase I | |||
| 1565 | serine O-acetyltransferase | |||
| 1570 | R | HpyJA109IP (97% identity) | CATG | Hpyfe13ORF1575P |
| 1575 | M | M.HpyC208I (98% identity) | CATG | M.Hpyfe13ORF1575P |
| 1580 | HAD family hydrolase | |||
| 2035 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 2040 | M | M.HpyK116XII (98% identity) | GCGC | M.Hpyfe13ORF2040P |
| 2045 | 144 aa hypothetical protein | |||
| 2215 | Laminin subunit alpha-2 precursor | |||
| 2220 | R | Hpyfe93ORF2050P (100% identity) | TCNNGA | Hpyfe13ORF2225P |
| 2225 | M | M.Hpyfe120ORF2030P (99% identity) | TCNNGA | M.Hpyfe13ORF2225P |
| 2230 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2875 | ATP-dependent helicase | |||
| 2880 | M | M.HpyCA20VIII (98% identity) | GTNNAC | M.Hpyfe13ORF2880P |
| 2885 | R | HpyF209ORF905P (98% identity) | GTNNAC | Hpyfe13ORF2880P |
| 2890 | flagellar hook protein FlgE | |||
| 3075 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3080 | M | M.Hpyfe64ORF5220P (99% identity) | GTAC | M.Hpyfe13ORF3080P |
| 3085 | R | Hpyfe3ORF4695P (97% identity) | GTAC | Hpyfe13ORF3080P |
| 3090 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3900 | (Fe-S)-binding protein | |||
| ??? | RM | HpyK022ORF3345P (92% identity) | Hpyfe13ORF3910P | |
| 3915 | outer membrane protein | |||
| 4940 | catalase | |||
| 4945 | R | HpyUM065ORF7975P (99% identity) | ACGT | Hpyfe13ORF4950P |
| 4950 | M | M.HpyK021ORF2315P (99% identity) | ACGT | M.Hpyfe13ORF4950P |
| 4955 | GIY-YIG nuclease family protein | |||
| 4950 | DNA cytosine methyltransferase | |||
| 4955 | R | Hpyfe32ORF4930P (99% identity) | ACNGT | Hpyfe13ORF4960P |
| 4960 | M | M.Hpyfe7ORF4785P (99% identity) | ACNGT | M.Hpyfe13ORF4960P |
| 4965 | translational GTPase TypA | |||
| 4970 | lipopolysaccharide heptosyltransferase family | |||
| 4975 | M | M.Hpy256ORFFP (98% identity) | ATTAAT | M.Hpyfe13ORF4975P |
| 4980 | Hop family outer membrane protein HopJ/HopK | |||
| 5695 | 125 aa hypothetical protein | |||
| 5700 | M | M.Hpyfe72ORF5515P (86% identity) | M.Hpyfe13ORF5700P | |
| 5705 | R | Hpyfe55ORF5525P (94% identity) | Hpyfe13ORF5700P | |
| 5710 | polysaccharide deacetylase | |||
| 5945 | AAA family ATPase | |||
| 5950 | M | M.HpyFD506ORFRP (98% identity) | CCGG | M.Hpyfe13ORF5950P |
| 5955 | R | Hpyfe22ORF5920P (96% identity) | CCGG | Hpyfe13ORF5950P |
| 5960 | exodeoxyribonuclease VII large subunit | |||
| 6365 | pseudaminic acid synthase | |||
| 6370 | R | R2.Hpyfe64ORF1930P (98% identity) | R1.Hpyfe13ORF6370P | |
| 6375 | R | R1.Hpyfe64ORF1930P (98% identity) | R2.Hpyfe13ORF6370P | |
| 6380 | 95 aa hypothetical protein | |||
| 6635 | ACP S-malonyltransferase | |||
| 6645 | R | Hpyfe36ORF6625P (98% identity) | GATC | Hpyfe13ORF6650P |
| 6650 | M | M.Hpyfe16ORF1405P (98% identity) | GATC | M.Hpyfe13ORF6650P |
| 6655 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6700 | glycosyltransferase | |||
| 6705 | R | Hpyfe81ORF1020P (100% identity) | Hpyfe13ORF6710P | |
| 6710 | M | M.Hpyfe93ORF6640P (99% identity) | M.Hpyfe13ORF6710P | |
| 6715 | methyl-accepting chemotaxis protein TlpB | |||
| 7035 | DNA cytosine methyltransferase | |||
| 7040 | R | HpyOK304ORFQP (94% identity) | CCTC | Hpyfe13ORF7045P |
| 7045 | M | M1.Hpyfe33ORF6780P (99% identity) | CCTC | M1.Hpyfe13ORF7045P |
| 7050 | M | M1.HpySG33V (98% identity) | CCTC | M2.Hpyfe13ORF7045P |
| 7055 | agmatine deiminase | |||
| 7100 | DNA methyltransferase | |||
| 7105 | R | Hpyfe112ORF7265P (98% identity) | GANTC | Hpyfe13ORF7110P |
| 7110 | M | M.Hpyfe99ORF7240P (100% identity) | GANTC | M.Hpyfe13ORF7110P |
| 7115 | N-6 DNA methylase | |||
| 7110 | site-specific DNA-methyltransferase | |||
| 7115 | RM | HpySG18ORF275P (89% identity) | Hpyfe13ORF7115P | |
| 7120 | carboxylating nicotinate-nucleotide | |||
| 7630 | translation elongation factor Ts | |||
| 7635 | R | HpyM6CORFCP (98% identity) | TGCA | Hpyfe13ORF7640P |
| 7640 | M | M.HpyPF57XIII (99% identity) | TGCA | M.Hpyfe13ORF7640P |
| 7645 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyU011ORF7420P (98% identity) | M.Hpyfe13ORF40P | |
| 50 | R | HpyCHN1ORF7290P (96% identity) | Hpyfe13ORF40P | |
| 55 | class I SAM-dependent DNA methyltransferase | |||
| 795 | biotin synthase | |||
| 800 | R | Hpyfe122ORF630P (95% identity) | Hpyfe13ORF805P | |
| 805 | M | M.Hpyfe82ORF640P (97% identity) | M.Hpyfe13ORF805P | |
| 810 | DNA/RNA non-specific endonuclease | |||
| 7170 | copper response regulator transcription factor | |||
| ??? | M | M.HpyU425ORF195P (98% identity) | M.Hpyfe13ORF7175P | |
| 7180 | R | HpyCHN4XIP (96% identity) | Hpyfe13ORF7175P | |
| 7185 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3120 | type I glutamate--ammonia ligase | |||
| 3125 | R | Hpyfe125GmrSD2P (95% identity) | Hpyfe13GmrSD2P | |
| 3130 | 50S ribosomal protein L9 | |||
| 3715 | sel1 repeat family protein | |||
| 3720 | R | Hpyfe7GmrSD2P (95% identity) | Hpyfe13GmrSDP | |
| 3725 | NAD(P)H-dependent oxidoreductase | |||