Helicobacter pylori Hpfe0015 |
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Putative Helicobacter pylori Hpfe0015 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,559,327 bp
GenBank #: CP094161
REBASE acronym: Hpyfe15
Org_num: 57275
All begin MPG04_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2995 | phosphatase PAP2 family protein | |||
| 3000 | M | M.Hpy155ORF9500P (95% identity) | GAANNNNNNNRTC | M.Hpyfe15ORF3000P |
| 3005 | S | S.HpyJ182ORF5305P (94% identity) | GAANNNNNNNRTC | S.Hpyfe15ORF3000P |
| 3010 | R | HpyTW10IXP (97% identity) | GAANNNNNNNRTC | Hpyfe15ORF3000P |
| 3015 | hydroxyethylthiazole kinase | |||
| 3315 | restriction endonuclease subunit S | |||
| 3320 | S | S.HpySH010ORF2990P (62% identity) | S.Hpyfe15ORF3320P | |
| 3325 | outer membrane beta-barrel protein HofF | |||
| 4870 | motility associated factor glycosyltransferase | |||
| 4875 | R | HpyJSHR31ORF9580P (95% identity) | CACNNNNNTC | Hpyfe15ORF4880P |
| 4880 | M | M.HpyF233ORFNP (96% identity) | CACNNNNNTC | M.Hpyfe15ORF4880P |
| 4885 | S | S.HpyLIM7XI (98% identity) | CACNNNNNTC | S.Hpyfe15ORF4880P |
| 4895 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpySG24ORF7095P (90% identity) | Hpyfe15ORF55P | |
| 60 | transcription termination factor NusA | |||
| 265 | ComF family protein | |||
| 270 | RM | HpySG36ORF7025P (99% identity) | CYANNNNNNTTC | Hpyfe15ORF270P |
| 275 | S | S.HpyL010ORF7000P (95% identity) | S.Hpyfe15ORF270P | |
| 280 | DNA polymerase I | |||
| 560 | UDP-N-acetylmuramate dehydrogenase | |||
| 565 | M | M.Hpyfe24ORF555P (99% identity) | M.Hpyfe15ORF565P | |
| 570 | R | Hpyfe124ORF550P (99% identity) | Hpyfe15ORF565P | |
| 575 | glycosyltransferase family 8 protein | |||
| 1405 | IceA2 protein | |||
| 1410 | M | M.Hpyfe36ORF1425P (98% identity) | CATG | M.Hpyfe15ORF1410P |
| 1415 | HAD family hydrolase | |||
| 1590 | purine-nucleoside phosphorylase | |||
| 1595 | R | Hpyfe48ORF1580P (99% identity) | TCNGA | Hpyfe15ORF1600P |
| 1600 | M | M.HpySG36VIII (99% identity) | TCNGA | M.Hpyfe15ORF1600P |
| 1605 | Hop family adhesin HopQ | |||
| 1875 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1880 | M | M.HpyJA101XI (98% identity) | GCGC | M.Hpyfe15ORF1880P |
| 1885 | 144 aa hypothetical protein | |||
| 2055 | Laminin subunit alpha-2 precursor | |||
| 2060 | R | Hpyfe85ORF2060P (100% identity) | TCNNGA | Hpyfe15ORF2065P |
| 2065 | M | M.Hpy4105ORFPP (99% identity) | TCNNGA | M.Hpyfe15ORF2065P |
| 2070 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2725 | ATP-dependent helicase | |||
| 2730 | M | M.HpyK037V (98% identity) | GTNNAC | M.Hpyfe15ORF2730P |
| 2735 | R | HpyUM067ORF8150P (97% identity) | GTNNAC | Hpyfe15ORF2730P |
| 2740 | flagellar hook protein FlgE | |||
| 3885 | outer membrane protein | |||
| 3890 | RM | Hpyfe89ORF3870P (92% identity) | Hpyfe15ORF3890P | |
| 3895 | (Fe-S)-binding protein | |||
| 4680 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4685 | R | HpyV007VIIIP (98% identity) | GTAC | Hpyfe15ORF4690P |
| 4690 | M | M.HpyV006X (99% identity) | GTAC | M.Hpyfe15ORF4690P |
| 4695 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4775 | catalase | |||
| 4780 | R | Hpyfe33ORF4780P (99% identity) | ACNGT | Hpyfe15ORF4785P |
| 4785 | M | M.Hpyfe8ORF2145P (99% identity) | ACNGT | M.Hpyfe15ORF4785P |
| 4790 | translational GTPase TypA | |||
| 4795 | lipopolysaccharide heptosyltransferase family | |||
| 4800 | M | M.HpyMA23IV (98% identity) | ATTAAT | M.Hpyfe15ORF4800P |
| 4805 | Hop family outer membrane protein HopJ/HopK | |||
| 5730 | AAA family ATPase | |||
| 5735 | M | M.Hpyfe110ORF6235P (100% identity) | CCGG | M.Hpyfe15ORF5735P |
| 5740 | R | HpyK154ORF2335P (96% identity) | CCGG | Hpyfe15ORF5735P |
| 5745 | 206 aa hypothetical protein | |||
| 5745 | 206 aa hypothetical protein | |||
| 5750 | M | M.HpyCHN5IX (99% identity) | TCGA | M.Hpyfe15ORF5750P |
| 5755 | exodeoxyribonuclease VII large subunit | |||
| 6540 | alpha-1,2-fucosyltransferase | |||
| 6545 | M | M.HpySG18VIII (96% identity) | GATC | M.Hpyfe15ORF6545P |
| 6550 | HTH domain-containing protein | |||
| 6730 | sodium/proline symporter PutP | |||
| 6735 | R | Hpyfe49ORF6980P (97% identity) | CCTC | Hpyfe15ORF6740P |
| 6740 | M | M1.Hpyfe55ORF6810P (98% identity) | CCTC | M1.Hpyfe15ORF6740P |
| 6745 | M | M2.Hpyfe58ORF7035P (98% identity) | CCTC | M2.Hpyfe15ORF6740P |
| 6750 | agmatine deiminase | |||
| 6795 | DNA methyltransferase | |||
| 6800 | RM | HpyP97ORFUP (89% identity) | Hpyfe15ORF6800P | |
| 6805 | carboxylating nicotinate-nucleotide | |||
| 6855 | copper response regulator transcription factor | |||
| 6860 | R | HpyF20JORF35P (98% identity) | GAAGA | Hpyfe15ORF6865P |
| 6865 | M | M1.Hpyfe123ORF7145P (99% identity) | GAAGA | M1.Hpyfe15ORF6865P |
| 6870 | M | M2.Hpyfe23ORF7115P (99% identity) | GAAGA | M2.Hpyfe15ORF6865P |
| 6875 | site-specific DNA-methyltransferase | |||
| 7330 | 111 aa hypothetical protein | |||
| 7335 | R | HpyFD506ORFWP (98% identity) | TGCA | Hpyfe15ORF7340P |
| 7340 | M | M.HpyTW16IV (99% identity) | TGCA | M.Hpyfe15ORF7340P |
| 7345 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpyfe23ORF40P (97% identity) | M.Hpyfe15ORF40P | |
| 50 | R | Hpyfe92ORF40P (98% identity) | Hpyfe15ORF40P | |
| 55 | class I SAM-dependent DNA methyltransferase | |||
| 635 | biotin synthase | |||
| 640 | R | HpyU425ORF6595P (95% identity) | Hpyfe15ORF645P | |
| 645 | M | M.HpyK052ORF6440P (98% identity) | M.Hpyfe15ORF645P | |
| 650 | DNA/RNA non-specific endonuclease | |||
| 6870 | site-specific DNA-methyltransferase | |||
| 6875 | M | M.HpySG24ORF200P (98% identity) | M.Hpyfe15ORF6875P | |
| 6880 | R | HpyID7ORF195P (96% identity) | Hpyfe15ORF6875P | |
| 6885 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4070 | NAD(P)H-dependent oxidoreductase | |||
| 4075 | R | Hpyfe124GmrSDP (95% identity) | Hpyfe15GmrSD2P | |
| 4080 | sel1 repeat family protein | |||
| 4640 | 50S ribosomal protein L9 | |||
| 4645 | R | HpySG14GmrSDP (90% identity) | Hpyfe15GmrSDP | |
| 4650 | type I glutamate--ammonia ligase | |||