Helicobacter pylori Hpfe0016 |
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Putative Helicobacter pylori Hpfe0016 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,564,699 bp
GenBank #: CP094160
REBASE acronym: Hpyfe16
Org_num: 57276
All begin MPG03_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3430 | phosphatase PAP2 family protein | |||
| 3435 | M | M.Hpyfe49ORF4670P (96% identity) | CTANNNNNNNTTC | M.Hpyfe16ORF3435P |
| 3440 | S | S.HpyCA20V (96% identity) | CTANNNNNNNTTC | S.Hpyfe16ORF3435P |
| 3445 | R | Hpyfe58ORF4885P (96% identity) | CTANNNNNNNTTC | Hpyfe16ORF3435P |
| 3450 | hydroxyethylthiazole kinase | |||
| 7535 | M48 family metallopeptidase | |||
| 7540 | R | Hpyfe23ORF7685P (97% identity) | CRTANNNNNNNTC | Hpyfe16ORF7545P |
| 7545 | M | M.Hpy18ORF6920P (97% identity) | CRTANNNNNNNTC | M.Hpyfe16ORF7545P |
| 7550 | S | S.Hpyfe53ORF3535P (98% identity) | CRTANNNNNNNTC | S.Hpyfe16ORF7545P |
| 7555 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 713 aa hypothetical protein | |||
| 60 | RM | Hpyfe10ORF55P (93% identity) | Hpyfe16ORF60P | |
| 65 | transcription termination factor NusA | |||
| 130 | outer membrane protein | |||
| 135 | R | HpyOki128ORF6495P (72% identity) | CCATC | Hpyfe16ORF140P |
| 140 | M | M2.HpySWT14VIII (92% identity) | CCATC | M1.Hpyfe16ORF140P |
| 145 | M | M1.HpyK115II (99% identity) | CCATC | M2.Hpyfe16ORF140P |
| 150 | LptF/LptG family permease | |||
| 275 | ComF family protein | |||
| 280 | RM | HpyMA08ORF6810P (96% identity) | CYANNNNNNTTC | Hpyfe16ORF280P |
| 285 | S | S1.HpyCA15ORF585P (95% identity) | S1.Hpyfe16ORF280P | |
| 290 | S | S2.HpyOK03ORFCP (92% identity) | S2.Hpyfe16ORF280P | |
| 295 | DNA polymerase I | |||
| 565 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 570 | M | M.Hpyfe70ORF1875P (99% identity) | GCGC | M.Hpyfe16ORF570P |
| 575 | 144 aa hypothetical protein | |||
| 745 | Laminin subunit alpha-2 precursor | |||
| 750 | R | Hpyfe85ORF2060P (99% identity) | TCNNGA | Hpyfe16ORF755P |
| 755 | M | M.Hpy4ORF5270P (99% identity) | TCNNGA | M.Hpyfe16ORF755P |
| 760 | acetyl-CoA carboxylase biotin carboxylase | |||
| 1190 | agmatine/peptidylarginine deiminase | |||
| 1195 | M | M2.Hpyfe56ORF7135P (98% identity) | CCTC | M1.Hpyfe16ORF1195P |
| 1200 | M | M2.HpyTW18VIIP (99% identity) | M2.Hpyfe16ORF1195P | |
| 1205 | sodium/proline symporter PutP | |||
| 1390 | ACP S-malonyltransferase | |||
| 1400 | R | HpyL027IIP (94% identity) | GATC | Hpyfe16ORF1405P |
| 1405 | M | M.Hpy72ORF149P (98% identity) | GATC | M.Hpyfe16ORF1405P |
| 1410 | alpha-1,2-fucosyltransferase | |||
| 2275 | exodeoxyribonuclease VII large subunit | |||
| 2280 | R | Hpyfe35ORF5870P (96% identity) | CCGG | Hpyfe16ORF2285P |
| 2285 | M | M.Hpyfe97ORF6090P (100% identity) | CCGG | M.Hpyfe16ORF2285P |
| 2290 | AAA family ATPase | |||
| 2725 | translation elongation factor 4 | |||
| 2730 | M | M.HpyPU006ORF1745P (99% identity) | GCNGC | M.Hpyfe16ORF2730P |
| 2735 | group I intron-associated PD-(D/E)XK | |||
| 3240 | Hop family outer membrane protein HopJ/HopK | |||
| 3245 | M | M.Hpy5ORF5760P (97% identity) | ATTAAT | M.Hpyfe16ORF3245P |
| 3250 | lipopolysaccharide heptosyltransferase family | |||
| 3255 | translational GTPase TypA | |||
| 3260 | M | M.HpyTW17V (99% identity) | ACNGT | M.Hpyfe16ORF3260P |
| 3265 | R | Hpyfe61ORF5010P (99% identity) | ACNGT | Hpyfe16ORF3260P |
| 3270 | DNA cytosine methyltransferase | |||
| 3265 | GIY-YIG nuclease family protein | |||
| 3270 | M | M.HpyJ028ORF2570P (99% identity) | ACGT | M.Hpyfe16ORF3270P |
| 3275 | R | Hpyfe10ORF4925P (99% identity) | ACGT | Hpyfe16ORF3270P |
| 3280 | catalase | |||
| 3730 | cadmium-translocating P-type ATPase | |||
| 3735 | M | M.HpyJ05ORF2725P (99% identity) | M.Hpyfe16ORF3735P | |
| 3740 | R | HpyTW02ORF2780P (99% identity) | Hpyfe16ORF3735P | |
| 3745 | outer membrane beta-barrel protein HofF | |||
| 5145 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 5150 | R | HpyTW05XP (98% identity) | GTAC | Hpyfe16ORF5155P |
| 5155 | M | M.Hpyfe125ORF2815P (99% identity) | GTAC | M.Hpyfe16ORF5155P |
| 5160 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 5345 | flagellar hook protein FlgE | |||
| 5350 | R | HpyP90ORFEP (94% identity) | GTNNAC | Hpyfe16ORF5355P |
| 5355 | M | M.Hpyfe81ORF4825P (96% identity) | GTNNAC | M.Hpyfe16ORF5355P |
| 5360 | ATP-dependent helicase | |||
| 6220 | HAD family hydrolase | |||
| 6225 | M | M.HpyHK721ORFTP (98% identity) | CATG | M.Hpyfe16ORF6225P |
| 6230 | R | HpyBS22ORF1415P (86% identity) | CATG | Hpyfe16ORF6225P |
| 6235 | serine O-acetyltransferase | |||
| 6925 | DNA methyltransferase | |||
| ??? | RM | HpyCHN1ORF275P (91% identity) | GGWTAA | Hpyfe16ORF6935P |
| 6940 | carboxylating nicotinate-nucleotide | |||
| 7445 | 175 aa hypothetical protein | |||
| 7450 | R | Hpy4105ORFCP (99% identity) | TGCA | Hpyfe16ORF7455P |
| 7455 | M | M.HpyV001XIV (100% identity) | TGCA | M.Hpyfe16ORF7455P |
| 7460 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpyfe115ORF40P (97% identity) | M.Hpyfe16ORF40P | |
| 50 | R | HpyK043ORF7155P (96% identity) | Hpyfe16ORF40P | |
| 55 | 713 aa hypothetical protein | |||
| 1065 | biotin synthase | |||
| 1070 | R | Hpyfe92ORF650P (95% identity) | Hpyfe16ORF1075P | |
| 1075 | M | M.HpyK023ORF6585P (97% identity) | M.Hpyfe16ORF1075P | |
| 1080 | DNA/RNA non-specific endonuclease | |||
| 6990 | copper response regulator transcription factor | |||
| ??? | M | M.HpyPF57ORF205P (56% identity) | M.Hpyfe16ORFAP | |
| 7000 | R | HpyOK303ORFNP (95% identity) | Hpyfe16ORFAP | |
| 7005 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4510 | NAD(P)H-dependent oxidoreductase | |||
| 4515 | R | HpyT030GmrSD2P (94% identity) | Hpyfe16GmrSD2P | |
| 4520 | sel1 repeat family protein | |||
| 5105 | 50S ribosomal protein L9 | |||
| 5110 | R | HpyT027GmrSDP (89% identity) | Hpyfe16GmrSDP | |
| 5115 | type I glutamate--ammonia ligase | |||