Helicobacter pylori Hpfe0020 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori Hpfe0020 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,576,980 bp
GenBank #: CP094159
REBASE acronym: Hpyfe17
Org_num: 57277
All begin MPG77_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4275 | outer membrane beta-barrel protein HofF | |||
| 4280 | S | S.HpyJA106ORF4240P (93% identity) | CAANNNNNNNTTC | S.Hpyfe17ORF4280P |
| 4285 | cadmium-translocating P-type ATPase | |||
| 4565 | hydroxyethylthiazole kinase | |||
| 4570 | R | Hpyfe22ORF4765P (97% identity) | CCANNNNNNNNTTC | Hpyfe17ORF4580P |
| 4575 | S | S.HpyL002ORF2665P (93% identity) | CCANNNNNNNNTTC | S.Hpyfe17ORF4580P |
| 4580 | M | M.HpyK048ORF4155P (96% identity) | CCANNNNNNNNTTC | M.Hpyfe17ORF4580P |
| 4585 | phosphatase PAP2 family protein | |||
| 4835 | type I restriction endonuclease | |||
| 4840 | R | Hpyfe104ORF3000P (70% identity) | CACNNNNNTC | Hpyfe17ORF4845P |
| 4845 | M | M.HpyF233ORFNP (97% identity) | CACNNNNNTC | M.Hpyfe17ORF4845P |
| 4850 | S | S.HpyF18KORF469P (98% identity) | CACNNNNNTC | S.Hpyfe17ORF4845P |
| 4860 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | 717 aa hypothetical protein | |||
| 55 | RM | HpyK101XVII (85% identity) | Hpyfe17ORF55P | |
| 60 | transcription termination factor NusA | |||
| 260 | ComF family protein | |||
| 265 | RM | Hpyfe15ORF270P (98% identity) | CYANNNNNNTTC | Hpyfe17ORF265P |
| 270 | S | S.HpyK051ORF7025P (44% identity) | S.Hpyfe17ORF265P | |
| 275 | DNA polymerase I | |||
| 950 | ATP-dependent helicase | |||
| 955 | M | M.HpySP16IX (98% identity) | GTNNAC | M.Hpyfe17ORF955P |
| 960 | R | HpyNP09XIIIP (98% identity) | GTNNAC | Hpyfe17ORF955P |
| 965 | flagellar hook protein FlgE | |||
| 1185 | serine O-acetyltransferase | |||
| 1190 | R | Hpyfe106ORF1405P (95% identity) | CATG | Hpyfe17ORF1195P |
| 1195 | M | M.HpyJ029I (99% identity) | CATG | M.Hpyfe17ORF1195P |
| 1200 | HAD family hydrolase | |||
| 1645 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1650 | M | M.HpyK009XIII (99% identity) | GCGC | M.Hpyfe17ORF1650P |
| 1655 | 144 aa hypothetical protein | |||
| 1830 | Laminin subunit alpha-2 precursor | |||
| 1835 | R | Hpyfe85ORF2060P (100% identity) | TCNNGA | Hpyfe17ORF1840P |
| 1840 | M | M.Hpyfe92ORF2245P (100% identity) | TCNNGA | M.Hpyfe17ORF1840P |
| 1845 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2885 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2890 | M | M.Hpyfe49ORF2870P (98% identity) | GTAC | M.Hpyfe17ORF2890P |
| 2895 | R | HpyTW05XP (97% identity) | GTAC | Hpyfe17ORF2890P |
| 2900 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3695 | (Fe-S)-binding protein | |||
| 3700 | RM | HpyCHN9ORF3425P (92% identity) | Hpyfe17ORF3700P | |
| 3705 | outer membrane protein | |||
| 4735 | catalase | |||
| 4740 | R | HpyTW23ORF2345P (99% identity) | ACNGT | Hpyfe17ORF4745P |
| 4745 | M | M.HpyV002II (99% identity) | ACNGT | M.Hpyfe17ORF4745P |
| 4750 | translational GTPase TypA | |||
| 4755 | lipopolysaccharide heptosyltransferase family | |||
| 4760 | M | M.Hpyfe29ORF4865P (98% identity) | ATTAAT | M.Hpyfe17ORF4760P |
| 4765 | Hop family outer membrane protein HopJ/HopK | |||
| 5485 | 119 aa hypothetical protein | |||
| 5490 | M | M.Hpyfe127ORF5625P (100% identity) | CTNAG | M.Hpyfe17ORF5490P |
| 5495 | R | HpyU011VIP (99% identity) | CTNAG | Hpyfe17ORF5490P |
| 5500 | polysaccharide deacetylase | |||
| 5730 | AAA family ATPase | |||
| 5735 | M | M.Hpyfe65ORF5760P (99% identity) | CCGG | M.Hpyfe17ORF5735P |
| 5740 | R | HpyCHN9IVP (95% identity) | CCGG | Hpyfe17ORF5735P |
| 5745 | 204 aa hypothetical protein | |||
| 5745 | 204 aa hypothetical protein | |||
| 5750 | M | M.Hpyfe61ORF5990P (99% identity) | TCGA | M.Hpyfe17ORF5750P |
| 5755 | exodeoxyribonuclease VII large subunit | |||
| 6155 | pseudaminic acid synthase | |||
| 6160 | R | Hpy30ORF1117P (98% identity) | R1.Hpyfe17ORF6170P | |
| 6165 | R | R1.Hpy78ORF220P (98% identity) | R2.Hpyfe17ORF6170P | |
| 6170 | M | M.Hpyfe2ORF6380P (99% identity) | M.Hpyfe17ORF6170P | |
| 6175 | elongation factor P | |||
| 6425 | ACP S-malonyltransferase | |||
| 6435 | R | Hpy66IIIP (95% identity) | GATC | Hpyfe17ORF6440P |
| 6440 | M | M.Hpyfe16ORF1405P (97% identity) | GATC | M.Hpyfe17ORF6440P |
| 6445 | alpha-1,2-fucosyltransferase | |||
| 6795 | sodium/proline symporter PutP | |||
| 6800 | R | Hpyfe101ORF6835P (99% identity) | GTSAC | Hpyfe17ORF6805P |
| 6805 | M | M.Hpyfe101ORF6835P (96% identity) | GTSAC | M.Hpyfe17ORF6805P |
| 6810 | HNH endonuclease | |||
| 6805 | site-specific DNA-methyltransferase | |||
| 6810 | R | HpyJ010IXP (97% identity) | CCTC | Hpyfe17ORF6815P |
| 6815 | M | M2.HpyC018IXP (99% identity) | CCTC | M1.Hpyfe17ORF6815P |
| 6820 | M | M1.HpyJ022XII (99% identity) | CCTC | M2.Hpyfe17ORF6815P |
| 6825 | agmatine deiminase | |||
| 6865 | S41 family peptidase | |||
| 6870 | R | Hpyfe75ORF7180P (97% identity) | GANTC | Hpyfe17ORF6875P |
| 6875 | M | M.HpyU011VIII (98% identity) | GANTC | M.Hpyfe17ORF6875P |
| 6880 | 380 aa hypothetical protein | |||
| 6880 | 380 aa hypothetical protein | |||
| 6885 | RM | HpyJ026ORF265P (68% identity) | Hpyfe17ORF6885P | |
| 6890 | carboxylating nicotinate-nucleotide | |||
| 7400 | DUF5343 domain-containing protein | |||
| 7405 | M | M.HpyOK304ORFKP (98% identity) | M.Hpyfe17ORF7405P | |
| 7410 | type II restriction endonuclease | |||
| 7405 | DNA cytosine methyltransferase | |||
| 7410 | R | Hpyfe77ORF7700P (99% identity) | TGCA | Hpyfe17ORF7415P |
| 7415 | M | M.HpySG07XI (99% identity) | TGCA | M.Hpyfe17ORF7415P |
| 7420 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyJ009ORF7275P (96% identity) | M.Hpyfe17ORF40P | |
| 45 | R | HpyOK68ORFFP (97% identity) | Hpyfe17ORF40P | |
| 50 | 717 aa hypothetical protein | |||
| 2145 | biotin synthase | |||
| 2150 | R | HpySG17ORF1010P (95% identity) | Hpyfe17ORF2155P | |
| 2155 | M | M.Hpyfe103ORF630P (97% identity) | M.Hpyfe17ORF2155P | |
| 2160 | DNA/RNA non-specific endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2930 | type I glutamate--ammonia ligase | |||
| 2935 | R | HpyMA22GmrSDP (89% identity) | Hpyfe17GmrSD2P | |
| 2940 | 50S ribosomal protein L9 | |||
| 3510 | sel1 repeat family protein | |||
| 3515 | R | HpyTW01GmrSD2P (96% identity) | Hpyfe17GmrSDP | |
| 3520 | NAD(P)H-dependent oxidoreductase | |||