Helicobacter pylori Hpfe0021 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori Hpfe0021 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,615,407 bp
GenBank #: CP094157
REBASE acronym: Hpyfe21
Org_num: 57278
All begin MPG52_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 395 | LPP20 family lipoprotein | |||
| 400 | S | S.HpyCO8XII (61% identity) | S.Hpyfe21ORF410P | |
| 405 | CAAX protease | |||
| 410 | M | M.HpyC024II (94% identity) | M.Hpyfe21ORF410P | |
| 415 | R | HpyC101VIIP (95% identity) | Hpyfe21ORF410P | |
| 420 | M48 family metallopeptidase | |||
| 3520 | cadmium-translocating P-type ATPase | |||
| 3525 | S | S.HpyU008ORF3145P (97% identity) | S.Hpyfe21ORF3525P | |
| 3530 | outer membrane beta-barrel protein HofF | |||
| 4875 | hydroxyethylthiazole kinase | |||
| 4880 | R | HpyL004XIIIP (94% identity) | Hpyfe21ORF4890P | |
| 4885 | S | S.HpyF002ORF3515P (96% identity) | S.Hpyfe21ORF4890P | |
| 4890 | M | M.Hpy13345ORF989P (89% identity) | M.Hpyfe21ORF4890P | |
| 4895 | phosphatase PAP2 family protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | 719 aa hypothetical protein | |||
| 55 | RM | HpySW26XVII (87% identity) | Hpyfe21ORF55P | |
| 60 | SocA family protein | |||
| 135 | outer membrane protein | |||
| 140 | R | Hpyfe76ORF140P (98% identity) | CCATC | Hpyfe21ORF145P |
| 145 | M | M2.HpyLI03VIII (93% identity) | CCATC | M1.Hpyfe21ORF145P |
| 150 | M | M1.HpySW33II (98% identity) | CCATC | M2.Hpyfe21ORF145P |
| 155 | LptF/LptG family permease | |||
| 280 | ComF family protein | |||
| 285 | RM | HpyT005ORF6820P (98% identity) | CYANNNNNNTRG | Hpyfe21ORF285P |
| 290 | S | S.Hpyfe82ORF290P (99% identity) | S.Hpyfe21ORF285P | |
| 295 | DNA polymerase I | |||
| 340 | addiction module antidote protein | |||
| 345 | M | M2.HpyK109ORF6905P (100% identity) | M1.Hpyfe21ORF345P | |
| 350 | M | M1.HpyK109ORF6905P (100% identity) | M2.Hpyfe21ORF345P | |
| 355 | R | HpyL029ORF7075P (100% identity) | Hpyfe21ORF345P | |
| 360 | cytochrome-c peroxidase | |||
| 495 | 67 aa hypothetical protein | |||
| 500 | M | M.HpyU123XIII (98% identity) | TGCA | M.Hpyfe21ORF500P |
| 505 | R | HpyKH6ORFJP (98% identity) | TGCA | Hpyfe21ORF500P |
| 510 | cytochrome c1 | |||
| 1010 | agmatine/peptidylarginine deiminase | |||
| 1015 | M | M1.HpyT003VII (97% identity) | CCTC | M1.Hpyfe21ORF1015P |
| 1020 | M | M2.HpyBT302ORFOP (97% identity) | M2.Hpyfe21ORF1015P | |
| 1025 | sodium/proline symporter PutP | |||
| 1205 | HTH domain-containing protein | |||
| 1210 | M | M.HpyGE9VII (98% identity) | GATC | M.Hpyfe21ORF1210P |
| 1215 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 1995 | exodeoxyribonuclease VII large subunit | |||
| 2000 | M | M.HpyT009XII (99% identity) | TCGA | M.Hpyfe21ORF2000P |
| 2005 | 204 aa hypothetical protein | |||
| 2005 | 204 aa hypothetical protein | |||
| 2010 | R | HpyC102IIP (96% identity) | CCGG | Hpyfe21ORF2015P |
| 2015 | M | M.HpyGE4IV (98% identity) | CCGG | M.Hpyfe21ORF2015P |
| 2020 | AAA family ATPase | |||
| 2430 | translation elongation factor 4 | |||
| 2435 | M | M.Hpyoh1ORF4535P (99% identity) | GCNGC | M.Hpyfe21ORF2435P |
| 2440 | group I intron-associated PD-(D/E)XK | |||
| 2950 | Hop family outer membrane protein HopJ/HopK | |||
| 2955 | M | M.HpyBT302ORFIP (97% identity) | ATTAAT | M.Hpyfe21ORF2955P |
| 2960 | lipopolysaccharide heptosyltransferase family | |||
| 3035 | 225 aa hypothetical protein | |||
| 3040 | M | M.HpyS298II (56% identity) | M.Hpyfe21ORF3040P | |
| 3045 | R | HpyBGR4ORF2360P (98% identity) | Hpyfe21ORF3040P | |
| 3050 | DNA cytosine methyltransferase | |||
| 3045 | GIY-YIG nuclease family protein | |||
| 3050 | M | M.HpyBR3ORF2195P (45% identity) | M.Hpyfe21ORF3050P | |
| 3055 | catalase | |||
| 3150 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3155 | M | M.HpyKH26ORFEP (95% identity) | GTAC | M.Hpyfe21ORF3155P |
| 3160 | R | HpyPE114XIIP (97% identity) | GTAC | Hpyfe21ORF3155P |
| 3165 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4110 | outer membrane protein | |||
| 4115 | RM | HpyIS5ORF3335P (86% identity) | Hpyfe21ORF4115P | |
| 4120 | (Fe-S)-binding protein | |||
| 4720 | osmoprotection binding protein | |||
| 4725 | R | HpySP507IVP (98% identity) | CGWCG | Hpyfe21ORF4730P |
| 4730 | M | M.HpySW14V (100% identity) | CGWCG | M.Hpyfe21ORF4730P |
| 4735 | ABC transporter permease subunit | |||
| 5150 | flagellar hook protein FlgE | |||
| 5155 | R | HpySP10XIIIP (97% identity) | GTNNAC | Hpyfe21ORF5160P |
| 5160 | M | M.HpyBGR5VIII (97% identity) | GTNNAC | M.Hpyfe21ORF5160P |
| 5165 | ATP-dependent helicase | |||
| 5840 | acetyl-CoA carboxylase biotin carboxylase | |||
| 5845 | M | M.HpyJO3XIII (99% identity) | TCNNGA | M.Hpyfe21ORF5845P |
| 5850 | R | HpyPO102IXP (98% identity) | TCNNGA | Hpyfe21ORF5845P |
| 5855 | Laminin subunit alpha-2 precursor | |||
| 6035 | 144 aa hypothetical protein | |||
| 6040 | R | Hpyfe82ORF1850P (100% identity) | GCGC | Hpyfe21ORF6045P |
| 6045 | M | M.Hpyfe82ORF1850P (99% identity) | GCGC | M.Hpyfe21ORF6045P |
| 6050 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 6320 | outer membrane beta-barrel protein | |||
| 6325 | M | M.HpyP110XII (99% identity) | TCNGA | M.Hpyfe21ORF6325P |
| 6330 | R | HpyKH23ORFCP (97% identity) | TCNGA | Hpyfe21ORF6325P |
| 6335 | purine-nucleoside phosphorylase | |||
| 6505 | HAD family hydrolase | |||
| 6510 | M | M.HpyAR5I (96% identity) | CATG | M.Hpyfe21ORF6510P |
| 6515 | IceA2 protein | |||
| 7225 | DNA methyltransferase | |||
| 7230 | R | HpyT001VP (97% identity) | GANTC | Hpyfe21ORF7235P |
| 7235 | M | M.Hpy030VI (99% identity) | GANTC | M.Hpyfe21ORF7235P |
| 7240 | 378 aa hypothetical protein | |||
| 7235 | site-specific DNA-methyltransferase | |||
| 7240 | RM | Hpy017ORF6370P (27% identity) | Hpyfe21ORF7240BP | |
| 7245 | N-6 DNA methylase | |||
| 7250 | RM | HpyKH23ORFWP (17% identity) | Hpyfe21ORF7240AP | |
| 7255 | carboxylating nicotinate-nucleotide | |||
| 7240 | 378 aa hypothetical protein | |||
| 7245 | RM | HpyC024ORF6580P (53% identity) | Hpyfe21ORF7245P | |
| 7250 | DNA methyltransferase | |||
| 7305 | copper response regulator transcription factor | |||
| 7310 | R | HpyNAD1ORFF1P (99% identity) | GAAGA | Hpyfe21ORF7315P |
| 7315 | M | M1.HpyNAD1ORFF1P (99% identity) | GAAGA | M1.Hpyfe21ORF7315P |
| 7320 | M | M2.HpyU204VIII (99% identity) | GAAGA | M2.Hpyfe21ORF7315P |
| 7325 | site-specific DNA-methyltransferase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.Hpy5AEK1ORFFP (94% identity) | M.Hpyfe21ORF40P | |
| 45 | R | HpyH012XIIIP (92% identity) | Hpyfe21ORF40P | |
| 50 | 719 aa hypothetical protein | |||
| 7320 | site-specific DNA-methyltransferase | |||
| 7325 | M | M.HpyNCI56ORFWP (93% identity) | M.Hpyfe21ORF7325P | |
| 7330 | R | HpyI024ORF6565P (94% identity) | Hpyfe21ORF7325P | |
| 7335 | rod shape-determining protein MreC | |||
| 7385 | DNA/RNA non-specific endonuclease | |||
| 7390 | M | M.Hpy17ORF1304P (96% identity) | M.Hpyfe21ORF7390P | |
| 7395 | R | Hpyfe23ORF650P (95% identity) | Hpyfe21ORF7390P | |
| 7400 | biotin synthase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3195 | type I glutamate--ammonia ligase | |||
| 3200 | R | HpyL019GmrSDP (91% identity) | Hpyfe21GmrSDP | |
| 3205 | 50S ribosomal protein L9 | |||
| 4305 | NAD(P)H-dependent oxidoreductase | |||
| 4310 | R | HpySP105GmrSD2P (94% identity) | Hpyfe21GmrSD2P | |
| 4315 | sel1 repeat family protein | |||