Helicobacter pylori Hpfe005 |
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Putative Helicobacter pylori Hpfe005 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,595,694 bp
GenBank #: CP094156
REBASE acronym: Hpyfe5
Org_num: 57279
All begin MPG67_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5055 | motility associated factor glycosyltransferase | |||
| 5060 | R | Hpyfe122ORF4885P (94% identity) | CCANNNNNNTC | Hpyfe5ORF5065P |
| 5065 | M | M.HpyQ59ORFIP (98% identity) | CCANNNNNNTC | M.Hpyfe5ORF5065P |
| 5070 | S | S.HpyK051II (98% identity) | CCANNNNNNTC | S.Hpyfe5ORF5065P |
| 5080 | RNA degradosome polyphosphate kinase | |||
| 7625 | M48 family metallopeptidase | |||
| 7630 | R | Hpyfe54ORF7510P (100% identity) | CRTANNNNNNNTC | Hpyfe5ORF7635P |
| 7635 | M | M.Hpyfe54ORF7510P (100% identity) | CRTANNNNNNNTC | M.Hpyfe5ORF7635P |
| 7640 | CAAX protease | |||
| 7645 | S | S.Hpyfe75ORF7840P (98% identity) | CRTANNNNNNNTC | S.Hpyfe5ORF7635P |
| 7650 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 712 aa hypothetical protein | |||
| 60 | RM | Hpy1829AVII (92% identity) | Hpyfe5ORF60P | |
| 65 | transcription termination factor NusA | |||
| 130 | outer membrane protein | |||
| 135 | R | Hpyfe54ORF145P (100% identity) | CCATC | Hpyfe5ORF140P |
| 140 | M | M2.HpyTN2ORF14370P (100% identity) | CCATC | M1.Hpyfe5ORF140P |
| 145 | M | M2.Hpyfe88ORF155P (99% identity) | CCATC | M2.Hpyfe5ORF140P |
| 150 | LptF/LptG family permease | |||
| 275 | ComF family protein | |||
| 280 | RM | Hpyfe54ORF285P (99% identity) | CYANNNNNNTTC | Hpyfe5ORF280P |
| 285 | S | S.Hpyfe54ORF285P (52% identity) | S1.Hpyfe5ORF280P | |
| 290 | S | S.Hpyfe54ORF285P (43% identity) | S2.Hpyfe5ORF280P | |
| 295 | DNA polymerase I | |||
| 1420 | IceA2 protein | |||
| 1425 | M | M.Hpyfe54ORF1430P (100% identity) | CATG | M.Hpyfe5ORF1425P |
| 1430 | HAD family hydrolase | |||
| 1880 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1885 | M | M.Hpyfe54ORF1885P (100% identity) | GCGC | M.Hpyfe5ORF1885P |
| 1890 | 144 aa hypothetical protein | |||
| 2070 | Laminin subunit alpha-2 precursor | |||
| 2075 | R | Hpyfe85ORF2060P (100% identity) | TCNNGA | Hpyfe5ORF2080P |
| 2080 | M | M.Hpyfe54ORF2075P (100% identity) | TCNNGA | M.Hpyfe5ORF2080P |
| 2085 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2910 | ATP-dependent helicase | |||
| 2915 | M | M.HpyK037V (99% identity) | GTNNAC | M.Hpyfe5ORF2915P |
| 2920 | R | HpyTW08IXP (97% identity) | GTNNAC | Hpyfe5ORF2915P |
| 2925 | flagellar hook protein FlgE | |||
| 3180 | phosphatase PAP2 family protein | |||
| 3185 | R | Hpyfe54ORF3020P (99% identity) | GGCC | Hpyfe5ORF3190P |
| 3190 | M | M.HpysHP34ORF6260P (99% identity) | GGCC | M.Hpyfe5ORF3190P |
| 3195 | type I restriction-modification system subunit | |||
| 4045 | outer membrane protein | |||
| 4050 | RM | Hpy1829AORF7140P (94% identity) | Hpyfe5ORF4050P | |
| 4055 | (Fe-S)-binding protein | |||
| 4960 | catalase | |||
| 4965 | R | Hpyfe54ORF4810P (100% identity) | ACGT | Hpyfe5ORF4970P |
| 4970 | M | M.Hpyfe54ORF4810P (100% identity) | ACGT | M.Hpyfe5ORF4970P |
| 4975 | translational GTPase TypA | |||
| 4980 | lipopolysaccharide heptosyltransferase family | |||
| 4985 | M | M.Hpyfe54ORF4825P (100% identity) | ATTAAT | M.Hpyfe5ORF4985P |
| 4990 | Hop family outer membrane protein HopJ/HopK | |||
| 5690 | 128 aa hypothetical protein | |||
| 5695 | M | M.Hpyfe54ORF5540P (100% identity) | CTNAG | M.Hpyfe5ORF5695P |
| 5700 | R | Hpyfe54ORF5540P (100% identity) | CTNAG | Hpyfe5ORF5695P |
| 5705 | polysaccharide deacetylase | |||
| 5935 | AAA family ATPase | |||
| 5940 | M | M.HpyJ021ORF1415P (95% identity) | CCGG | M.Hpyfe5ORF5940P |
| 5945 | R | Hpyfe54ORF5785P (100% identity) | CCGG | Hpyfe5ORF5940P |
| 5950 | 204 aa hypothetical protein | |||
| 5950 | 204 aa hypothetical protein | |||
| 5955 | M | M.Hpy28ORF291P (98% identity) | TCGA | M.Hpyfe5ORF5955P |
| 5960 | exodeoxyribonuclease VII large subunit | |||
| 6750 | alpha-1,2-fucosyltransferase | |||
| 6755 | M | M.Hpyfe54ORF6615P (100% identity) | GATC | M.Hpyfe5ORF6755P |
| 6760 | R | Hpyfe54ORF6615P (100% identity) | GATC | Hpyfe5ORF6755P |
| 6770 | ACP S-malonyltransferase | |||
| 6945 | sodium/proline symporter PutP | |||
| 6950 | M | M1.Hpyfe104ORF6710P (99% identity) | M1.Hpyfe5ORF6950P | |
| 6955 | M | M2.Hpyfe54ORF6825P (99% identity) | CCTC | M2.Hpyfe5ORF6950P |
| 6960 | agmatine deiminase | |||
| 7005 | DNA methyltransferase | |||
| 7010 | R | Hpyfe54ORF6890P (100% identity) | GANTC | Hpyfe5ORF7015P |
| 7015 | M | M.Hpyfe64ORF7055P (100% identity) | GANTC | M.Hpyfe5ORF7015P |
| 7020 | DNA methyltransferase | |||
| 7015 | site-specific DNA-methyltransferase | |||
| ??? | RM | HpyJA108ORF255P (92% identity) | Hpyfe5ORF7020P | |
| 7035 | carboxylating nicotinate-nucleotide | |||
| 7535 | 103 aa hypothetical protein | |||
| 7540 | R | Hpyfe96ORF7485P (99% identity) | TGCA | Hpyfe5ORF7545P |
| 7545 | M | M.HpyJ002II (98% identity) | TGCA | M.Hpyfe5ORF7545P |
| 7550 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpyfe54ORF40P (99% identity) | M.Hpyfe5ORF40P | |
| 50 | R | Hpyfe54ORF40P (99% identity) | Hpyfe5ORF40P | |
| 55 | 712 aa hypothetical protein | |||
| 635 | biotin synthase | |||
| 640 | R | Hpyfe54ORF655P (99% identity) | Hpyfe5ORF645P | |
| 645 | M | M.Hpyfe92ORF650P (96% identity) | M.Hpyfe5ORF645P | |
| 650 | DNA/RNA non-specific endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4230 | NAD(P)H-dependent oxidoreductase | |||
| 4235 | R | HpyYN483GmrSD2P (95% identity) | Hpyfe5GmrSD2P | |
| 4240 | sel1 repeat family protein | |||
| 4815 | 50S ribosomal protein L9 | |||
| 4820 | R | Hpyfe54GmrSDP (99% identity) | Hpyfe5GmrSDP | |
| 4825 | type I glutamate--ammonia ligase | |||