Helicobacter pylori Hpfe010 |
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Putative Helicobacter pylori Hpfe010 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,576,566 bp
GenBank #: CP094153
REBASE acronym: Hpyfe10
Org_num: 57280
All begin MPF98_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4465 | outer membrane beta-barrel protein HofF | |||
| 4470 | S | S.HpyNP09VIII (95% identity) | CTANNNNNNNCTT | S.Hpyfe10ORF4470P |
| 4475 | cadmium-translocating P-type ATPase | |||
| 4750 | hydroxyethylthiazole kinase | |||
| 4755 | R | HpyK110ORF3710P (96% identity) | AAGNNNNNNCTT | Hpyfe10ORF4765P |
| 4760 | S | S.Hpyfe49ORF4360P (96% identity) | AAGNNNNNNCTT | S.Hpyfe10ORF4765P |
| 4765 | M | M.Hpyfe73ORF4650P (96% identity) | AAGNNNNNNCTT | M.Hpyfe10ORF4765P |
| 4770 | phosphatase PAP2 family protein | |||
| 5020 | motility associated factor glycosyltransferase | |||
| ??? | R | HpyF227ORFRP (94% identity) | Hpyfe10ORF5040P | |
| 5040 | M | M.Hpyfe108ORF5045P (100% identity) | M.Hpyfe10ORF5040P | |
| 5045 | S | S.Hpyfe108ORF5045P (99% identity) | S.Hpyfe10ORF5040P | |
| 5055 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | Hpyfe16ORF60P (93% identity) | Hpyfe10ORF55P | |
| 60 | 177 aa hypothetical protein | |||
| 1405 | serine O-acetyltransferase | |||
| 1410 | R | HpyTW20VP (92% identity) | CATG | Hpyfe10ORF1415P |
| 1415 | M | M.HpyTW04I (98% identity) | CATG | M.Hpyfe10ORF1415P |
| 1420 | HAD family hydrolase | |||
| 1590 | purine-nucleoside phosphorylase | |||
| 1595 | R | Hpyfe108ORF1605P (100% identity) | TCNGA | Hpyfe10ORF1600P |
| 1600 | M | M.Hpyfe108ORF1605P (100% identity) | TCNGA | M.Hpyfe10ORF1600P |
| 1605 | 76 aa hypothetical protein | |||
| 1885 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1890 | M | M.Hpyfe108ORF1895P (99% identity) | GCGC | M.Hpyfe10ORF1890P |
| 1895 | 144 aa hypothetical protein | |||
| 2065 | Laminin subunit alpha-2 precursor | |||
| 2070 | R | Hpyfe108ORF2080P (100% identity) | TCNNGA | Hpyfe10ORF2075P |
| 2075 | M | M.Hpyfe85ORF2060P (99% identity) | TCNNGA | M.Hpyfe10ORF2075P |
| 2080 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2850 | ATP-dependent helicase | |||
| 2855 | M | M.Hpyfe108ORF2865P (99% identity) | GTNNAC | M.Hpyfe10ORF2855P |
| 2860 | R | Hpyfe35ORF2845P (96% identity) | GTNNAC | Hpyfe10ORF2855P |
| 2865 | flagellar hook protein FlgE | |||
| 3930 | outer membrane protein | |||
| 3935 | RM | Hpyfe4ORF3720P (93% identity) | Hpyfe10ORF3935P | |
| 3940 | (Fe-S)-binding protein | |||
| 4915 | catalase | |||
| 4920 | R | Hpyfe108ORF4930P (100% identity) | ACGT | Hpyfe10ORF4925P |
| 4925 | M | M.Hpyfe108ORF4930P (100% identity) | ACGT | M.Hpyfe10ORF4925P |
| 4930 | GIY-YIG nuclease family protein | |||
| 4925 | DNA cytosine methyltransferase | |||
| 4930 | R | Hpyfe108ORF4940P (100% identity) | ACNGT | Hpyfe10ORF4935P |
| 4935 | M | M.Hpyfe108ORF4940P (100% identity) | ACNGT | M.Hpyfe10ORF4935P |
| 4940 | translational GTPase TypA | |||
| 4945 | lipopolysaccharide heptosyltransferase family | |||
| 4950 | M | M.Hpyfe108ORF4955P (100% identity) | ATTAAT | M.Hpyfe10ORF4950P |
| 4955 | Hop family outer membrane protein HopJ/HopK | |||
| 5920 | AAA family ATPase | |||
| 5925 | M | M.Hpyfe108ORF5925P (100% identity) | CCGG | M.Hpyfe10ORF5925P |
| 5930 | R | Hpyfe108ORF5925P (99% identity) | CCGG | Hpyfe10ORF5925P |
| 5935 | 204 aa hypothetical protein | |||
| 5935 | 204 aa hypothetical protein | |||
| 5940 | M | M.Hpyfe108ORF5940P (100% identity) | TCGA | M.Hpyfe10ORF5940P |
| 5945 | exodeoxyribonuclease VII large subunit | |||
| 6345 | pseudaminic acid synthase | |||
| 6350 | R | R1.Hpyfe108ORF6360P (99% identity) | R1.Hpyfe10ORF6350P | |
| 6355 | R | R2.Hpyfe108ORF6360P (100% identity) | R2.Hpyfe10ORF6350P | |
| 6360 | 86 aa hypothetical protein | |||
| 6755 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6760 | M | M.Hpy66III (98% identity) | GATC | M.Hpyfe10ORF6760P |
| 6765 | R | Hpyfe108ORF6765P (100% identity) | GATC | Hpyfe10ORF6760P |
| 6775 | ACP S-malonyltransferase | |||
| 6920 | sodium/proline symporter PutP | |||
| 6925 | M | M1.Hpyfe12ORF7025P (82% identity) | M1.Hpyfe10ORF6925P | |
| 6930 | M | M1.HpyK052V (98% identity) | CCTC | M2.Hpyfe10ORF6925P |
| 6935 | agmatine deiminase | |||
| 6980 | DNA methyltransferase | |||
| 6985 | R | Hpyfe108ORF7000P (98% identity) | GANTC | Hpyfe10ORF6990P |
| 6990 | M | M.Hpyfe89ORF7150P (99% identity) | GANTC | M.Hpyfe10ORF6990P |
| 6995 | carboxylating nicotinate-nucleotide | |||
| 7520 | 107 aa hypothetical protein | |||
| 7525 | R | Hpyfe108ORF7535P (96% identity) | TGCA | Hpyfe10ORF7530P |
| 7530 | M | M.HpyP003XII (98% identity) | TGCA | M.Hpyfe10ORF7530P |
| 7535 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpy39ORFMP (97% identity) | M.Hpyfe10ORF40P | |
| 50 | R | Hpyfe108ORF40P (98% identity) | Hpyfe10ORF40P | |
| 55 | class I SAM-dependent DNA methyltransferase | |||
| 640 | biotin synthase | |||
| 645 | R | Hpyfe108ORF660P (97% identity) | Hpyfe10ORF650P | |
| 650 | M | M.Hpyfe108ORF660P (99% identity) | M.Hpyfe10ORF650P | |
| 655 | DNA/RNA non-specific endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3100 | type I glutamate--ammonia ligase | |||
| 3105 | R | Hpyfe108GmrSDP (98% identity) | Hpyfe10GmrSDP | |
| 3110 | 50S ribosomal protein L9 | |||
| 3695 | sel1 repeat family protein | |||
| 3700 | R | Hpyfe108GmrSD2P (99% identity) | Hpyfe10GmrSD2P | |
| 3705 | NAD(P)H-dependent oxidoreductase | |||