Helicobacter pylori Hpfe022 |
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Putative Helicobacter pylori Hpfe022 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,617,425 bp
GenBank #: CP094150
REBASE acronym: Hpyfe22
Org_num: 57282
All begin MPG09_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4750 | hydroxyethylthiazole kinase | |||
| 4755 | R | Hpyfe7ORF2970P (97% identity) | CCANNNNNNRTAY | Hpyfe22ORF4765P |
| 4760 | S | S.HpyF93ORFRP (66% identity) | CCANNNNNNRTAY | S.Hpyfe22ORF4765P |
| 4765 | M | M.Hpy274ORF589P (95% identity) | CCANNNNNNRTAY | M.Hpyfe22ORF4765P |
| 4770 | phosphatase PAP2 family protein | |||
| 5020 | type I restriction endonuclease | |||
| 5025 | R | Hpy3ORF5480BP (96% identity) | CCANNNNNNTC | Hpyfe22ORF5030P |
| 5030 | M | M.HpyHP32ORF2220P (96% identity) | CCANNNNNNTC | M.Hpyfe22ORF5030P |
| 5035 | S | S.HpyCA6III (98% identity) | CCANNNNNNTC | S.Hpyfe22ORF5030P |
| 5045 | RNA degradosome polyphosphate kinase | |||
| 7670 | M48 family metallopeptidase | |||
| 7675 | R | Hpyfe74ORF7605P (97% identity) | Hpyfe22ORF7680P | |
| 7680 | M | M.HpyJA112VII (94% identity) | M.Hpyfe22ORF7680P | |
| 7685 | S | S.HpyJ029ORF7255P (94% identity) | S.Hpyfe22ORF7680P | |
| 7690 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 713 aa hypothetical protein | |||
| 60 | RM | Hpyfe5ORF60P (87% identity) | Hpyfe22ORF60P | |
| 65 | transcription termination factor NusA | |||
| 130 | outer membrane protein | |||
| 135 | R | HpyI018VP (96% identity) | CCATC | Hpyfe22ORF140P |
| 140 | M | M2.HpyR04IV (93% identity) | CCATC | M1.Hpyfe22ORF140P |
| 145 | M | M1.HpyT004IV (99% identity) | CCATC | M2.Hpyfe22ORF140P |
| 150 | LptF/LptG family permease | |||
| 275 | ComF family protein | |||
| 280 | R | HpyJ013IXP (100% identity) | GGATG | Hpyfe22ORF285P |
| 285 | M | M2.HpyK013VII (100% identity) | GGATG | M1.Hpyfe22ORF285P |
| 290 | M | M1.HpyK013VII (99% identity) | GGATG | M2.Hpyfe22ORF285P |
| 295 | C | C.Hpyfe73ORF275P (100% identity) | C.Hpyfe22ORF285P | |
| 300 | DNA polymerase I | |||
| 555 | UDP-N-acetylmuramate dehydrogenase | |||
| 560 | R | HpySP07VIIIP (96% identity) | GAATTC | Hpyfe22ORF565P |
| 565 | M | M.HpyTW24XIII (98% identity) | GAATTC | M.Hpyfe22ORF565P |
| 570 | glycosyltransferase family 8 protein | |||
| 1400 | serine O-acetyltransferase | |||
| 1405 | R | Hpyfe55ORF1430P (92% identity) | CATG | Hpyfe22ORF1410P |
| 1410 | M | M.HpyUM023ORF4605P (98% identity) | CATG | M.Hpyfe22ORF1410P |
| 1415 | HAD family hydrolase | |||
| 1585 | purine-nucleoside phosphorylase | |||
| 1590 | R | Hpy04ORFEP (97% identity) | TCNGA | Hpyfe22ORF1595P |
| 1595 | M | M.HpySG36VIII (99% identity) | TCNGA | M.Hpyfe22ORF1595P |
| 1600 | Hop family adhesin HopQ | |||
| 1875 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1880 | M | M.Hpyfe83ORF1845P (97% identity) | GCGC | M.Hpyfe22ORF1880P |
| 1885 | 144 aa hypothetical protein | |||
| 2055 | Laminin subunit alpha-2 precursor | |||
| 2060 | R | Hpyfe80ORF2045P (99% identity) | TCNNGA | Hpyfe22ORF2065P |
| 2065 | M | M.Hpyfe97ORF2230P (99% identity) | TCNNGA | M.Hpyfe22ORF2065P |
| 2070 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2710 | ATP-dependent helicase | |||
| 2715 | M | M.Hpy274ORF1066P (97% identity) | GTNNAC | M.Hpyfe22ORF2715P |
| 2720 | R | Hpyfe93ORF2830P (94% identity) | GTNNAC | Hpyfe22ORF2715P |
| 2725 | flagellar hook protein FlgE | |||
| 2915 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2920 | M | M.Hpy24ORF866P (95% identity) | GTAC | M.Hpyfe22ORF2920P |
| ??? | R | Hpyfe52ORF2915P (96% identity) | GTAC | Hpyfe22ORF2920P |
| 2935 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3770 | outer membrane protein | |||
| 3775 | RM | Hpyfe89ORF3870P (90% identity) | Hpyfe22ORF3775P | |
| 3780 | (Fe-S)-binding protein | |||
| 4920 | catalase | |||
| 4925 | R | HpyLI25ORF2230P (96% identity) | ACGT | Hpyfe22ORF4930P |
| 4930 | M | M.Hpy52ORF465P (99% identity) | ACGT | M.Hpyfe22ORF4930P |
| 4935 | translational GTPase TypA | |||
| 4940 | lipopolysaccharide heptosyltransferase family | |||
| 4945 | M | M.HpyK046III (99% identity) | ATTAAT | M.Hpyfe22ORF4945P |
| 4950 | Hop family outer membrane protein HopJ/HopK | |||
| 5460 | group I intron-associated PD-(D/E)XK | |||
| 5465 | M | M.Hpyoh1ORF4535P (100% identity) | GCNGC | M.Hpyfe22ORF5465P |
| 5470 | translation elongation factor 4 | |||
| 5665 | 119 aa hypothetical protein | |||
| 5670 | M | M.HpyJ015VII (99% identity) | CTNAG | M.Hpyfe22ORF5670P |
| 5675 | R | HpyF93ORFNP (99% identity) | CTNAG | Hpyfe22ORF5670P |
| 5680 | polysaccharide deacetylase | |||
| 5915 | AAA family ATPase | |||
| 5920 | M | M.HpyOK302ORFAP (99% identity) | CCGG | M.Hpyfe22ORF5920P |
| 5925 | R | HpyK111IIIP (97% identity) | CCGG | Hpyfe22ORF5920P |
| 5930 | 204 aa hypothetical protein | |||
| 5930 | 204 aa hypothetical protein | |||
| 5935 | M | M.HpyMA15II (99% identity) | TCGA | M.Hpyfe22ORF5935P |
| 5940 | exodeoxyribonuclease VII large subunit | |||
| 6345 | pseudaminic acid synthase | |||
| 6350 | R | R2.HpyF209ORF215P (90% identity) | R1.Hpyfe22ORF6360P | |
| 6355 | R | R2.Hpyfe122ORF6200P (95% identity) | R2.Hpyfe22ORF6360P | |
| 6360 | M | M.Hpyfe93ORF6315P (90% identity) | M.Hpyfe22ORF6360P | |
| 6365 | elongation factor P | |||
| 6750 | alpha-1,2-fucosyltransferase | |||
| 6755 | M | M.Hpy155ORF1940P (98% identity) | GATC | M.Hpyfe22ORF6755P |
| 6760 | R | HpyTW10VIP (97% identity) | GATC | Hpyfe22ORF6755P |
| 6770 | ACP S-malonyltransferase | |||
| 6955 | sodium/proline symporter PutP | |||
| 6960 | M | M1.Hpyfe104ORF6710P (99% identity) | M1.Hpyfe22ORF6960P | |
| 6965 | M | M2.Hpyfe120ORF6960P (96% identity) | CCTC | M2.Hpyfe22ORF6960P |
| 6970 | agmatine deiminase | |||
| 7015 | DNA methyltransferase | |||
| 7020 | R | HpyK052VIP (98% identity) | GANTC | Hpyfe22ORF7025P |
| 7025 | M | M.HpyF211ORF47P (99% identity) | GANTC | M.Hpyfe22ORF7025P |
| 7030 | DNA methyltransferase | |||
| 7035 | 260 aa hypothetical protein | |||
| 7040 | RM | Hpyfe38ORF6945P (96% identity) | Hpyfe22ORF7040P | |
| 7045 | carboxylating nicotinate-nucleotide | |||
| 7565 | 177 aa hypothetical protein | |||
| 7570 | R | HpyOK316ORFKP (99% identity) | TGCA | Hpyfe22ORF7575P |
| 7575 | M | M.HpyTW16IV (99% identity) | TGCA | M.Hpyfe22ORF7575P |
| 7580 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyTW23ORF7120P (96% identity) | M.Hpyfe22ORF40P | |
| 50 | R | HpyCHN6ORF6875P (97% identity) | Hpyfe22ORF40P | |
| 55 | 713 aa hypothetical protein | |||
| 630 | type III restriction endonuclease subunit R | |||
| 635 | R | HpyK024ORF6660P (96% identity) | Hpyfe22ORF640P | |
| 640 | M | M.HpyK010ORF6575P (97% identity) | M.Hpyfe22ORF640P | |
| 645 | DNA/RNA non-specific endonuclease | |||
| 7095 | copper response regulator transcription factor | |||
| 7100 | M | M.HpySG33XV (97% identity) | M.Hpyfe22ORF7100P | |
| 7105 | R | Hpyfe15ORF6875P (95% identity) | Hpyfe22ORF7100P | |
| 7110 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2965 | type I glutamate--ammonia ligase | |||
| 2970 | R | HpyCHN7GmrSDP (88% identity) | Hpyfe22GmrSD2P | |
| 2975 | 50S ribosomal protein L9 | |||
| 3545 | sel1 repeat family protein | |||
| 3550 | R | Hpyfe57GmrSDP (95% identity) | Hpyfe22GmrSDP | |
| 3555 | NAD(P)H-dependent oxidoreductase | |||