Helicobacter pylori Hpfe023 |
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Putative Helicobacter pylori Hpfe023 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,608,056 bp
GenBank #: CP094149
REBASE acronym: Hpyfe23
Org_num: 57283
All begin MPF84_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4790 | hydroxyethylthiazole kinase | |||
| 4795 | R | Hpyfe103ORF4610P (97% identity) | Hpyfe23ORF4805P | |
| 4800 | S | S.HpyH028ORF2940P (91% identity) | S.Hpyfe23ORF4805P | |
| 4805 | M | M.HpyH390rORF4595P (95% identity) | M.Hpyfe23ORF4805P | |
| 4810 | phosphatase PAP2 family protein | |||
| 5065 | type I restriction endonuclease | |||
| 5070 | R | HpyOK314ORFTP (86% identity) | CTANNNNNNTTA | Hpyfe23ORF5075P |
| 5075 | M | M.Hpyfe114ORF4890P (97% identity) | CTANNNNNNTTA | M.Hpyfe23ORF5075P |
| 5080 | S | S.HpyCO2ORF3830P (99% identity) | CTANNNNNNTTA | S.Hpyfe23ORF5075P |
| 5090 | RNA degradosome polyphosphate kinase | |||
| 7675 | M48 family metallopeptidase | |||
| 7680 | R | Hpyfe70ORF7585P (98% identity) | Hpyfe23ORF7685P | |
| 7685 | M | M.HpyPF57ORF7325P (97% identity) | M.Hpyfe23ORF7685P | |
| 7690 | S | S.HpySG13ORF7110P (45% identity) | S.Hpyfe23ORF7685P | |
| 7695 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpyTW21XVII (89% identity) | Hpyfe23ORF55P | |
| 60 | 193 aa hypothetical protein | |||
| 150 | outer membrane protein | |||
| 155 | R | HpyID5IIIP (97% identity) | CCATC | Hpyfe23ORF160P |
| 160 | M | M1.Hpyfe60ORF155P (99% identity) | CCATC | M1.Hpyfe23ORF160P |
| 165 | M | M2.Hpyfe71ORF135P (100% identity) | CCATC | M2.Hpyfe23ORF160P |
| 170 | LptF/LptG family permease | |||
| 295 | ComF family protein | |||
| 300 | RM | Hpyfe93ORF280P (98% identity) | CYANNNNNNTTC | Hpyfe23ORF300P |
| 305 | S | S.Hpyfe76ORF280P (69% identity) | S.Hpyfe23ORF300P | |
| 310 | DNA polymerase I | |||
| 1415 | serine O-acetyltransferase | |||
| 1420 | R | Hpyfe28ORF1405P (86% identity) | CATG | Hpyfe23ORF1425P |
| 1425 | M | M.Hpyfe124ORF1425P (98% identity) | CATG | M.Hpyfe23ORF1425P |
| 1430 | HAD family hydrolase | |||
| 1865 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1870 | M | M.Hpyfe88ORF1870P (98% identity) | GCGC | M.Hpyfe23ORF1870P |
| 1875 | 144 aa hypothetical protein | |||
| 2045 | Laminin subunit alpha-2 precursor | |||
| 2050 | R | Hpyfe59ORF2060P (99% identity) | TCNNGA | Hpyfe23ORF2055P |
| 2055 | M | M.HpySG13XIII (99% identity) | TCNNGA | M.Hpyfe23ORF2055P |
| 2060 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2870 | ATP-dependent helicase | |||
| 2875 | M | M.Hpyfe70ORF2820P (97% identity) | GTNNAC | M.Hpyfe23ORF2875P |
| 2880 | R | HpyU003XIP (99% identity) | GTNNAC | Hpyfe23ORF2875P |
| 2885 | flagellar hook protein FlgE | |||
| 3075 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 3080 | M | M.HpyU425VIII (99% identity) | GTAC | M.Hpyfe23ORF3080P |
| 3085 | R | Hpyfe40ORF2935P (99% identity) | GTAC | Hpyfe23ORF3080P |
| 3090 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3890 | (Fe-S)-binding protein | |||
| 3895 | RM | Hpyfe63ORF3825P (90% identity) | Hpyfe23ORF3895P | |
| 3900 | 453 aa hypothetical protein | |||
| 3985 | 3-5 exonuclease | |||
| 3990 | M | M.Hpyfe99ORF3980P (99% identity) | CCNNGG | M.Hpyfe23ORF3990P |
| 3995 | R | HpyTW16VIP (99% identity) | CCNNGG | Hpyfe23ORF3990P |
| 4000 | 3-5 exonuclease | |||
| 4635 | osmoprotection protein | |||
| 4640 | R | Hpyfe73ORF4490P (100% identity) | CGWCG | Hpyfe23ORF4645P |
| 4645 | M | M.Hpyfe73ORF4490P (100% identity) | CGWCG | M.Hpyfe23ORF4645P |
| 4650 | ABC transporter permease/substrate-binding | |||
| 4965 | DNA cytosine methyltransferase | |||
| 4970 | R | HpyMA23XIP (95% identity) | ACNGT | Hpyfe23ORF4975P |
| 4975 | M | M.HpyK044II (97% identity) | ACNGT | M.Hpyfe23ORF4975P |
| 4980 | translational GTPase TypA | |||
| 4985 | lipopolysaccharide heptosyltransferase family | |||
| 4990 | M | M.HpyK050IV (99% identity) | ATTAAT | M.Hpyfe23ORF4990P |
| 4995 | Hop family outer membrane protein HopJ/HopK | |||
| 5705 | 125 aa hypothetical protein | |||
| 5710 | M | M.HpyMA12ORF5140P (97% identity) | CTNAG | M.Hpyfe23ORF5710P |
| 5715 | R | Hpyfe53ORF5510P (63% identity) | CTNAG | Hpyfe23ORF5710P |
| 5720 | polysaccharide deacetylase | |||
| 5950 | AAA family ATPase | |||
| 5955 | M | M.Hpyfe38ORF5830P (100% identity) | CCGG | M.Hpyfe23ORF5955P |
| 5960 | R | HpyMA20IIP (96% identity) | CCGG | Hpyfe23ORF5955P |
| 5965 | 204 aa hypothetical protein | |||
| 5965 | 204 aa hypothetical protein | |||
| 5970 | M | M.Hpyfe93ORF5890P (99% identity) | TCGA | M.Hpyfe23ORF5970P |
| 5975 | exodeoxyribonuclease VII large subunit | |||
| 6765 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6770 | M | M.Hpyfe57ORF6730P (98% identity) | GATC | M.Hpyfe23ORF6770P |
| 6775 | R | HpyT030IXP (97% identity) | GATC | Hpyfe23ORF6770P |
| 6785 | ACP S-malonyltransferase | |||
| 6965 | DNA cytosine methyltransferase | |||
| 6970 | R | HpyK047IVP (98% identity) | CCTC | Hpyfe23ORF6975P |
| 6975 | M | M1.Hpyfe54ORF6825P (98% identity) | CCTC | M1.Hpyfe23ORF6975P |
| 6980 | M | M1.Hpy256ORFLP (99% identity) | CCTC | M2.Hpyfe23ORF6975P |
| 6985 | agmatine deiminase | |||
| 7025 | S41 family peptidase | |||
| 7030 | R | HpyOK304ORFMP (98% identity) | GANTC | Hpyfe23ORF7035P |
| 7035 | M | M.Hpy1100ORFCP (99% identity) | GANTC | M.Hpyfe23ORF7035P |
| 7040 | DNA methyltransferase | |||
| 7045 | 257 aa hypothetical protein | |||
| 7050 | RM | HpyK020ORF275P (94% identity) | Hpyfe23ORF7050P | |
| 7055 | carboxylating nicotinate-nucleotide | |||
| 7105 | copper response regulator transcription factor | |||
| 7110 | R | HpyP30ORFKP (99% identity) | GAAGA | Hpyfe23ORF7115P |
| 7115 | M | M1.Hpyfe6ORF6865P (100% identity) | GAAGA | M1.Hpyfe23ORF7115P |
| 7120 | M | M2.HpyU205VII (100% identity) | GAAGA | M2.Hpyfe23ORF7115P |
| 7125 | EcoRV family type II restriction endonuclease | |||
| 7125 | EcoRV family type II restriction endonuclease | |||
| 7130 | M | M.HpyK112VII (97% identity) | GATATC | M.Hpyfe23ORF7130P |
| 7135 | site-specific DNA-methyltransferase | |||
| 7580 | 166 aa hypothetical protein | |||
| 7585 | R | HpyMA22VIIIP (92% identity) | TGCA | Hpyfe23ORF7590P |
| 7590 | M | M.HpyML1ORFGP (98% identity) | TGCA | M.Hpyfe23ORF7590P |
| 7595 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpyfe115ORF40P (97% identity) | M.Hpyfe23ORF40P | |
| 50 | R | Hpyfe1ORF40P (96% identity) | Hpyfe23ORF40P | |
| 55 | Eco57I restriction-modification methylase | |||
| 640 | type III restriction endonuclease subunit R | |||
| 645 | R | Hpyfe21ORF7390P (95% identity) | Hpyfe23ORF650P | |
| 650 | M | M.Hpyfe125ORF610P (97% identity) | M.Hpyfe23ORF650P | |
| 655 | DNA/RNA non-specific endonuclease | |||
| 7130 | Dam family site-specific | |||
| 7135 | M | M.Hpyfe97ORF7225P (96% identity) | M.Hpyfe23ORF7135P | |
| 7140 | R | HpyJ021XIIP (94% identity) | Hpyfe23ORF7135P | |
| 7145 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3120 | type I glutamate--ammonia ligase | |||
| 3125 | R | Hpyfe52GmrSDP (89% identity) | Hpyfe23GmrSDP | |
| 3130 | 50S ribosomal protein L9 | |||
| 3695 | sel1 repeat family protein | |||
| 3700 | R | HpySG24GmrSD2P (96% identity) | Hpyfe23GmrSD2P | |
| 3705 | NAD(P)H-dependent oxidoreductase | |||