Helicobacter pylori Hpfe024 |
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Putative Helicobacter pylori Hpfe024 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,595,545 bp
GenBank #: CP094148
REBASE acronym: Hpyfe24
Org_num: 57284
All begin MPG61_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4765 | hydroxyethylthiazole kinase | |||
| 4770 | R | Hpy23ORF730P (87% identity) | CAANNNNNNNNTTC | Hpyfe24ORF4780P |
| 4775 | S | S.HpyOK316ORFYP (95% identity) | CAANNNNNNNNTTC | S.Hpyfe24ORF4780P |
| 4780 | M | M.HpySG02ORF2100P (95% identity) | CAANNNNNNNNTTC | M.Hpyfe24ORF4780P |
| 4785 | phosphatase PAP2 family protein | |||
| 5035 | type I restriction endonuclease | |||
| 5040 | R | Hpyfe54ORF4910P (96% identity) | CCANNNNNNTC | Hpyfe24ORF5045P |
| 5045 | M | M.Hpyfe114ORF4890P (97% identity) | CCANNNNNNTC | M.Hpyfe24ORF5045P |
| 5050 | S | S.Hpyfe33ORF4885P (98% identity) | CCANNNNNNTC | S.Hpyfe24ORF5045P |
| 5060 | RNA degradosome polyphosphate kinase | |||
| 7645 | M48 family metallopeptidase | |||
| 7650 | R | HpySG13ORF7110P (96% identity) | CRTANNNNNNNTC | Hpyfe24ORF7655P |
| 7655 | M | M.HpySG33XIII (96% identity) | CRTANNNNNNNTC | M.Hpyfe24ORF7655P |
| 7660 | S | S.HpySG13ORF7110P (97% identity) | CRTANNNNNNNTC | S.Hpyfe24ORF7655P |
| 7665 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | type III restriction-modification system | |||
| 50 | RM | Hpy1100ORFSP (91% identity) | Hpyfe24ORF50P | |
| 55 | transcription termination factor NusA | |||
| 120 | outer membrane protein | |||
| 125 | R | HpyU425IIIP (96% identity) | Hpyfe24ORF130P | |
| 130 | M | M1.Hpyfe93ORF140P (76% identity) | M.Hpyfe24ORF130BP | |
| 135 | M | M1.HpyPE117IV (31% identity) | M.Hpyfe24ORF130AP | |
| 140 | LptF/LptG family permease | |||
| 265 | ComF family protein | |||
| 270 | RM | HpyMA23ORF6940P (100% identity) | CYANNNNNNTTC | Hpyfe24ORF270P |
| 275 | S | S.Hpyfe12ORF280P (92% identity) | S.Hpyfe24ORF270P | |
| 280 | DNA polymerase I | |||
| 550 | UDP-N-acetylmuramate dehydrogenase | |||
| 555 | M | M.HpyUM038ORF8495P (100% identity) | CGCG | M.Hpyfe24ORF555P |
| 560 | R | HpyAL05ORFOP (99% identity) | CGCG | Hpyfe24ORF555P |
| 565 | glycosyltransferase family 8 protein | |||
| 1560 | IceA2 protein | |||
| 1565 | M | M.HpyF18KORF1187P (97% identity) | CATG | M.Hpyfe24ORF1565P |
| 1570 | HAD family hydrolase | |||
| 2015 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 2020 | M | M.HpyK116XII (99% identity) | GCGC | M.Hpyfe24ORF2020P |
| 2025 | 144 aa hypothetical protein | |||
| 2195 | Laminin subunit alpha-2 precursor | |||
| 2200 | R | HpyMKF3ORF1054P (64% identity) | TCNNGA | Hpyfe24ORF2210BP |
| 2205 | R | Hpys8ORF12770P (35% identity) | TCNNGA | Hpyfe24ORF2210AP |
| 2210 | M | M.HpyPE106ORF5040P (92% identity) | TCNNGA | M.Hpyfe24ORF2210P |
| 2215 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2850 | ATP-dependent helicase | |||
| 2855 | M | M.HpyT022XII (97% identity) | GTNNAC | M.Hpyfe24ORF2855P |
| 2860 | R | HpyTW22XP (97% identity) | GTNNAC | Hpyfe24ORF2855P |
| 2865 | flagellar hook protein FlgE | |||
| 3940 | 450 aa hypothetical protein | |||
| 3945 | RM | HpyMA08ORF3330P (68% identity) | Hpyfe24ORF3945BP | |
| 3950 | RM | HpyK036ORF3600P (21% identity) | Hpyfe24ORF3945AP | |
| 3955 | (Fe-S)-binding protein | |||
| 4935 | DNA cytosine methyltransferase | |||
| 4940 | R | Hpyfe28ORF4735P (100% identity) | ACNGT | Hpyfe24ORF4945P |
| 4945 | M | M.HpySG15II (99% identity) | ACNGT | M.Hpyfe24ORF4945P |
| 4950 | translational GTPase TypA | |||
| 4955 | lipopolysaccharide heptosyltransferase family | |||
| 4960 | M | M.HpyOK307ORFYP (98% identity) | ATTAAT | M.Hpyfe24ORF4960P |
| 4965 | Hop family outer membrane protein HopJ/HopK | |||
| 5675 | 128 aa hypothetical protein | |||
| 5680 | M | M.HpyK044III (99% identity) | CTNAG | M.Hpyfe24ORF5680P |
| 5685 | R | Hpy55ORF346P (99% identity) | CTNAG | Hpyfe24ORF5680P |
| 5690 | polysaccharide deacetylase | |||
| 5920 | AAA family ATPase | |||
| 5925 | M | M.Hpyfe59ORF5820P (99% identity) | CCGG | M.Hpyfe24ORF5925P |
| 5930 | R | Hpyfe2ORF5930P (97% identity) | CCGG | Hpyfe24ORF5925P |
| 5935 | 204 aa hypothetical protein | |||
| 5935 | 204 aa hypothetical protein | |||
| 5940 | M | M.Hpyfe126ORF5870P (100% identity) | TCGA | M.Hpyfe24ORF5940P |
| 5945 | exodeoxyribonuclease VII large subunit | |||
| 6340 | pseudaminic acid synthase | |||
| 6345 | R | R2.HpySG17ORF7290P (97% identity) | R2.Hpyfe24ORF6355P | |
| 6350 | R | R1.HpyJA115ORF880P (95% identity) | R1.Hpyfe24ORF6355P | |
| ??? | M | M2.Hpyfe100ORF6200P (99% identity) | M2.Hpyfe24ORF6355P | |
| ??? | M | M1.HpyTW04ORF960P (100% identity) | M1.Hpyfe24ORF6355P | |
| 6370 | elongation factor P | |||
| 6780 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6785 | M | M.Hpy52ORF105P (97% identity) | GATC | M.Hpyfe24ORF6785P |
| 6790 | R | Hpy192ORFDP (97% identity) | GATC | Hpyfe24ORF6785P |
| 6800 | ACP S-malonyltransferase | |||
| 6935 | sodium/proline symporter PutP | |||
| 6940 | M | M.HpyT029V (99% identity) | CCTTC | M.Hpyfe24ORF6940P |
| 6945 | R | HpyMA12XP (98% identity) | CCTTC | Hpyfe24ORF6940P |
| 6950 | restriction endonuclease | |||
| 6945 | restriction endonuclease | |||
| 6950 | R | Hpyfe32ORF6935P (100% identity) | GTSAC | Hpyfe24ORF6955P |
| 6955 | M | M.Hpyfe32ORF6935P (99% identity) | GTSAC | M.Hpyfe24ORF6955P |
| 6960 | HNH endonuclease | |||
| 6955 | site-specific DNA-methyltransferase | |||
| 6960 | R | HpySG12IVP (95% identity) | CCTC | Hpyfe24ORF6965P |
| 6965 | M | M1.Hpyfe54ORF6825P (98% identity) | CCTC | M1.Hpyfe24ORF6965P |
| 6970 | M | M1.Hpy1100ORFBP (99% identity) | CCTC | M2.Hpyfe24ORF6965P |
| 6975 | TerC family protein | |||
| 7010 | S41 family peptidase | |||
| ??? | RM | HpyJA108ORF255P (92% identity) | Hpyfe24ORF7015P | |
| 7030 | carboxylating nicotinate-nucleotide | |||
| 7080 | copper response regulator transcription factor | |||
| 7085 | R | Hpyfe61ORF7120P (98% identity) | GAAGA | Hpyfe24ORF7090P |
| 7090 | M | M2.HpySG32VII (100% identity) | GAAGA | M1.Hpyfe24ORF7090P |
| 7095 | M | M1.HpyID7VIII (99% identity) | GAAGA | M2.Hpyfe24ORF7090P |
| 7100 | EcoRV family type II restriction endonuclease | |||
| 7555 | 128 aa hypothetical protein | |||
| 7560 | R | Hpy377ORFDP (53% identity) | Hpyfe24ORF7565P | |
| ??? | M | M.HpyCHN5X (79% identity) | M.Hpyfe24ORF7565P | |
| 7570 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.Hpyfe107ORF40P (96% identity) | M.Hpyfe24ORF40P | |
| 45 | R | HpyOK212ORFEP (98% identity) | Hpyfe24ORF40P | |
| 50 | Eco57I restriction-modification methylase | |||
| 615 | biotin synthase | |||
| 620 | R | HpyOK304ORFEP (95% identity) | Hpyfe24ORF625P | |
| 625 | M | M.HpyTW04ORF6550P (97% identity) | M.Hpyfe24ORF625P | |
| 630 | DNA/RNA non-specific endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3095 | type I glutamate--ammonia ligase | |||
| 3100 | R | HpyTW24GmrSDP (90% identity) | Hpyfe24GmrSDP | |
| 3105 | 50S ribosomal protein L9 | |||
| 3695 | sel1 repeat family protein | |||
| 3700 | R | HpyTW16GmrSD2P (91% identity) | Hpyfe24GmrSD2P | |
| 3705 | NAD(P)H-dependent oxidoreductase | |||