Helicobacter pylori Hpfe027 |
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Putative Helicobacter pylori Hpfe027 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,581,642 bp
GenBank #: CP094147
REBASE acronym: Hpyfe27
Org_num: 57285
All begin MPG27_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4365 | outer membrane beta-barrel protein HofF | |||
| 4370 | S | S.HpySP303ORF3815P (93% identity) | CTANNNNNNRTAY | S.Hpyfe27ORF4370P |
| 4375 | cadmium-translocating P-type ATPase | |||
| 4660 | hydroxyethylthiazole kinase | |||
| 4665 | R | Hpyfe103ORF4610P (97% identity) | GCANNNNNNRTAY | Hpyfe27ORF4675P |
| 4670 | S | S.HpyB125AORF3255P (67% identity) | GCANNNNNNRTAY | S.Hpyfe27ORF4675P |
| 4675 | M | M.Hpyfe96ORF3030P (96% identity) | GCANNNNNNRTAY | M.Hpyfe27ORF4675P |
| 4680 | phosphatase PAP2 family protein | |||
| 7535 | M48 family metallopeptidase | |||
| 7540 | R | Hpyfe70ORF7585P (97% identity) | CRTANNNNNNCTT | Hpyfe27ORF7545P |
| 7545 | M | M.Hpyfe110ORF8065P (98% identity) | CRTANNNNNNCTT | M.Hpyfe27ORF7545P |
| 7550 | CAAX protease | |||
| 7555 | S | S.Hpy1136ORFFP (97% identity) | CRTANNNNNNCTT | S.Hpyfe27ORF7545P |
| 7560 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpyOK13ORFGP (88% identity) | Hpyfe27ORF55P | |
| 60 | 175 aa hypothetical protein | |||
| 145 | outer membrane protein | |||
| 150 | R | Hpyfe57ORF140P (95% identity) | Hpyfe27ORF150P | |
| 155 | DNA adenine methylase | |||
| 235 | integrase | |||
| 240 | M | M2.HpyIN9III (82% identity) | M1.Hpyfe27ORF240P | |
| 245 | M | M2.Hpyfe88ORF155P (100% identity) | CCATC | M2.Hpyfe27ORF240P |
| 250 | LptF/LptG family permease | |||
| 375 | ComF family protein | |||
| 380 | RM | HpyU424ORF7050P (96% identity) | CYANNNNNNTTC | Hpyfe27ORF380P |
| 385 | S | S.HpyISR5ORF7055P (94% identity) | S.Hpyfe27ORF380P | |
| 390 | DNA polymerase I | |||
| 645 | UDP-N-acetylmuramate dehydrogenase | |||
| 650 | M | M.HpyV006ORF6595P (93% identity) | M.Hpyfe27ORF650P | |
| 655 | R | HpyF234ORFSP (99% identity) | Hpyfe27ORF650P | |
| 660 | glycosyltransferase family 8 protein | |||
| 1480 | serine O-acetyltransferase | |||
| 1485 | R | HpyJA109IP (97% identity) | CATG | Hpyfe27ORF1490P |
| 1490 | M | M.Hpyfe99ORF1565P (99% identity) | CATG | M.Hpyfe27ORF1490P |
| 1495 | HAD family hydrolase | |||
| 1945 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1950 | M | M.Hpyfe99ORF2015P (97% identity) | GCGC | M.Hpyfe27ORF1950P |
| 1955 | 144 aa hypothetical protein | |||
| 2125 | Laminin subunit alpha-2 precursor | |||
| 2130 | R | Hpyfe93ORF2050P (98% identity) | TCNNGA | Hpyfe27ORF2135P |
| 2135 | M | M.HpyK109IV (99% identity) | TCNNGA | M.Hpyfe27ORF2135P |
| 2140 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2770 | ATP-dependent helicase | |||
| 2775 | M | M.HpyK114XII (98% identity) | GTNNAC | M.Hpyfe27ORF2775P |
| 2780 | R | HpyMKF8ORF913P (99% identity) | GTNNAC | Hpyfe27ORF2775P |
| 2785 | flagellar hook protein FlgE | |||
| 3840 | outer membrane protein | |||
| 3845 | RM | Hpyfe125ORF3670P (93% identity) | Hpyfe27ORF3845P | |
| 3850 | (Fe-S)-binding protein | |||
| 4835 | catalase | |||
| 4840 | R | Hpyfe56ORF5130P (99% identity) | ACNGT | Hpyfe27ORF4845P |
| 4845 | M | M.Hpybs3ORFQP (98% identity) | ACNGT | M.Hpyfe27ORF4845P |
| 4850 | translational GTPase TypA | |||
| 4855 | lipopolysaccharide heptosyltransferase family | |||
| 4860 | M | M.Hpy5ORF5760P (99% identity) | ATTAAT | M.Hpyfe27ORF4860P |
| 4865 | Hop family outer membrane protein HopJ/HopK | |||
| 5810 | AAA family ATPase | |||
| 5815 | M | M.HpyTW21III (96% identity) | CCGG | M.Hpyfe27ORF5815P |
| 5820 | R | Hpyfe126ORF5855P (96% identity) | CCGG | Hpyfe27ORF5815P |
| 5825 | 204 aa hypothetical protein | |||
| 5825 | 204 aa hypothetical protein | |||
| 5830 | M | M.Hpybs1ORFSP (98% identity) | TCGA | M.Hpyfe27ORF5830P |
| 5835 | exodeoxyribonuclease VII large subunit | |||
| 6245 | pseudaminic acid synthase | |||
| 6250 | R | R2.HpyPE138ORF850P (92% identity) | R1.Hpyfe27ORF6250P | |
| 6255 | R | R1.Hpyfe64ORF1930P (95% identity) | R2.Hpyfe27ORF6250P | |
| 6260 | elongation factor P | |||
| 6645 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6650 | M | M.Hpyfe24ORF6785P (97% identity) | GATC | M.Hpyfe27ORF6650P |
| 6655 | R | HpyTN2ORF1840P (97% identity) | GATC | Hpyfe27ORF6650P |
| 6665 | ACP S-malonyltransferase | |||
| 6825 | sodium/proline symporter PutP | |||
| 6830 | M | M2.HpyTW17ORF320P (98% identity) | M1.Hpyfe27ORF6830P | |
| 6835 | M | M.Hpy334ORFAP (98% identity) | CCTC | M2.Hpyfe27ORF6830P |
| 6840 | agmatine deiminase | |||
| 6890 | S41 family peptidase | |||
| 6895 | R | Hpy274ORF66P (98% identity) | GANTC | Hpyfe27ORF6900P |
| 6900 | M | M.HpyV008VI (99% identity) | GANTC | M.Hpyfe27ORF6900P |
| 6905 | N-6 DNA methylase | |||
| 6900 | site-specific DNA-methyltransferase | |||
| 6905 | RM | HpyK99ORFPP (85% identity) | Hpyfe27ORF6905P | |
| 6910 | carboxylating nicotinate-nucleotide | |||
| 7420 | DUF5343 domain-containing protein | |||
| ??? | M | M.HpyF226ORFFP (98% identity) | M.Hpyfe27ORF7425P | |
| 7435 | type II restriction endonuclease | |||
| 7430 | DNA cytosine methyltransferase | |||
| 7435 | R | HpyP89ORFHP (97% identity) | TGCA | Hpyfe27ORF7440P |
| 7440 | M | M.Hpyfe59ORF7460P (98% identity) | TGCA | M.Hpyfe27ORF7440P |
| 7445 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyP77ORFPP (95% identity) | M.Hpyfe27ORF40P | |
| 50 | R | HpyMA06ORF7425P (97% identity) | Hpyfe27ORF40P | |
| 55 | class I SAM-dependent DNA methyltransferase | |||
| 710 | biotin synthase | |||
| 715 | R | HpyK044ORF1220P (93% identity) | Hpyfe27ORF720P | |
| 720 | M | M.HpyT027ORF6930P (96% identity) | M.Hpyfe27ORF720P | |
| 725 | DNA/RNA non-specific endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3030 | type I glutamate--ammonia ligase | |||
| 3035 | R | Hpyfe2GmrSDP (85% identity) | Hpyfe27GmrSDP | |
| 3040 | 50S ribosomal protein L9 | |||
| 3610 | sel1 repeat family protein | |||
| 3615 | R | Hpyfe96GmrSD2P (93% identity) | Hpyfe27GmrSD2P | |
| 3620 | NAD(P)H-dependent oxidoreductase | |||