Helicobacter pylori Hpfe028 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Helicobacter pylori Hpfe028 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,559,488 bp
GenBank #: CP094145
REBASE acronym: Hpyfe28
Org_num: 57286
All begin MPG51_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4260 | outer membrane beta-barrel protein HofF | |||
| 4265 | S | S.Hpy14039ORFHP (93% identity) | AACNNNNNRTC | S.Hpyfe28ORF4265P |
| 4270 | cadmium-translocating P-type ATPase | |||
| 4550 | hydroxyethylthiazole kinase | |||
| 4555 | R | Hpyfe110ORF4070P (97% identity) | AAGNNNNNNTAG | Hpyfe28ORF4565P |
| 4560 | S | S.HpyKG4XIX (94% identity) | AAGNNNNNNTAG | S.Hpyfe28ORF4565P |
| 4565 | M | M.HpyDO9XIII (90% identity) | AAGNNNNNNTAG | M.Hpyfe28ORF4565P |
| 4570 | phosphatase PAP2 family protein | |||
| 4830 | type I restriction endonuclease | |||
| 4835 | R | Hpy1139ORFPP (84% identity) | CTANNNNNNTC | Hpyfe28ORF4840P |
| 4840 | M | M.Hpyfe37ORF4850P (96% identity) | CTANNNNNNTC | M.Hpyfe28ORF4840P |
| 4845 | S | S.Hpyfe97ORF5205P (98% identity) | CTANNNNNNTC | S.Hpyfe28ORF4840P |
| 4855 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpyJSHR6ORF100P (88% identity) | Hpyfe28ORF55P | |
| 60 | 183 aa hypothetical protein | |||
| 280 | ComF family protein | |||
| 285 | RM | Hpyfe15ORF270P (99% identity) | CYANNNNNNTTC | Hpyfe28ORF285P |
| 290 | S | S.Hpyfe32ORF290P (96% identity) | S.Hpyfe28ORF285P | |
| 295 | DNA polymerase I | |||
| 1395 | serine O-acetyltransferase | |||
| 1400 | R | HpyTW22IP (95% identity) | CATG | Hpyfe28ORF1405P |
| 1405 | M | M.Hpyfe55ORF1430P (99% identity) | CATG | M.Hpyfe28ORF1405P |
| 1410 | HAD family hydrolase | |||
| 1615 | carbon starvation protein A | |||
| 1620 | R | HpyU301VIP (100% identity) | CTRYAG | Hpyfe28ORF1625P |
| 1625 | M | M.HpyK005XI (99% identity) | CTRYAG | M.Hpyfe28ORF1625P |
| 1630 | outer membrane beta-barrel protein HofH | |||
| 1855 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1860 | M | M.Hpyfe123ORF1860P (99% identity) | GCGC | M.Hpyfe28ORF1860P |
| 1865 | 144 aa hypothetical protein | |||
| 2035 | Laminin subunit alpha-2 precursor | |||
| 2040 | R | HpyK006XIVP (98% identity) | TCNNGA | Hpyfe28ORF2045P |
| 2045 | M | M.Hpyfe92ORF2245P (99% identity) | TCNNGA | M.Hpyfe28ORF2045P |
| 2050 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2690 | ATP-dependent helicase | |||
| 2695 | M | M.HpyU425IX (98% identity) | GTNNAC | M.Hpyfe28ORF2695P |
| 2700 | R | Hpyfe38ORF2685P (97% identity) | GTNNAC | Hpyfe28ORF2695P |
| 2705 | flagellar hook protein FlgE | |||
| 2895 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2900 | M | M.Hpyfe125ORF2815P (99% identity) | GTAC | M.Hpyfe28ORF2900P |
| 2905 | R | HpyJA103VIP (97% identity) | GTAC | Hpyfe28ORF2900P |
| 2910 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3750 | outer membrane protein | |||
| 3755 | RM | Hpyfe61ORF4005P (92% identity) | Hpyfe28ORF3755P | |
| 3760 | (Fe-S)-binding protein | |||
| 4715 | catalase | |||
| 4720 | R | HpyUM065ORF7975P (98% identity) | ACGT | Hpyfe28ORF4725P |
| 4725 | M | M.HpyJA115ORF2285P (99% identity) | ACGT | M.Hpyfe28ORF4725P |
| 4730 | GIY-YIG nuclease family protein | |||
| 4725 | DNA cytosine methyltransferase | |||
| 4730 | R | Hpyfe24ORF4945P (100% identity) | ACNGT | Hpyfe28ORF4735P |
| 4735 | M | M.HpyV002II (99% identity) | ACNGT | M.Hpyfe28ORF4735P |
| 4740 | translational GTPase TypA | |||
| 4745 | lipopolysaccharide heptosyltransferase family | |||
| 4750 | M | M.HpyK049III (98% identity) | ATTAAT | M.Hpyfe28ORF4750P |
| 4755 | Hop family outer membrane protein HopJ/HopK | |||
| 5460 | 125 aa hypothetical protein | |||
| 5465 | M | M.HpyTW23VII (99% identity) | CTNAG | M.Hpyfe28ORF5465P |
| 5470 | R | HpyK014VIIP (98% identity) | CTNAG | Hpyfe28ORF5465P |
| 5475 | polysaccharide deacetylase | |||
| 5705 | AAA family ATPase | |||
| 5710 | M | M.Hpyfe71ORF5870P (100% identity) | CCGG | M.Hpyfe28ORF5710P |
| 5715 | R | HpyCA23IVP (98% identity) | CCGG | Hpyfe28ORF5710P |
| 5720 | 204 aa hypothetical protein | |||
| 5720 | 204 aa hypothetical protein | |||
| 5725 | M | M.Hpyfe77ORF1855P (100% identity) | TCGA | M.Hpyfe28ORF5725P |
| 5730 | exodeoxyribonuclease VII large subunit | |||
| 6140 | pseudaminic acid synthase | |||
| 6145 | R | R2.HpyNP04ORF1110P (97% identity) | R2.Hpyfe28ORF6155P | |
| 6150 | R | R1.HpyFD506ORFL1P (97% identity) | R1.Hpyfe28ORF6155P | |
| 6155 | M | M2.HpyZ004ORF860P (89% identity) | M1.Hpyfe28ORF6155P | |
| 6160 | M | M.HpyML2ORFJP (98% identity) | M2.Hpyfe28ORF6155P | |
| 6165 | elongation factor P | |||
| 6545 | alpha-1,2-fucosyltransferase | |||
| 6550 | M | M.Hpyfe99ORF6980P (99% identity) | GATC | M.Hpyfe28ORF6550P |
| 6555 | R | Hpyfe99ORF6980P (100% identity) | GATC | Hpyfe28ORF6550P |
| 6565 | ACP S-malonyltransferase | |||
| 6710 | DNA cytosine methyltransferase | |||
| 6715 | R | Hpyfe12ORF7025P (97% identity) | CCTC | Hpyfe28ORF6720P |
| 6720 | M | M1.Hpyfe33ORF6780P (98% identity) | CCTC | M1.Hpyfe28ORF6720P |
| 6725 | M | M1.HpySG15V (98% identity) | CCTC | M2.Hpyfe28ORF6720P |
| 6730 | agmatine deiminase | |||
| 6770 | S41 family peptidase | |||
| 6775 | RM | HpyK118ORF270P (89% identity) | Hpyfe28ORF6775P | |
| 6780 | carboxylating nicotinate-nucleotide | |||
| 7290 | DUF5343 domain-containing protein | |||
| 7295 | M | M.Hpy78ORF1530P (98% identity) | M.Hpyfe28ORF7295P | |
| 7300 | type II restriction endonuclease | |||
| 7295 | DNA cytosine methyltransferase | |||
| 7300 | R | Hpyfe99ORF7775P (98% identity) | TGCA | Hpyfe28ORF7305P |
| 7305 | M | M.HpyID2VIII (99% identity) | TGCA | M.Hpyfe28ORF7305P |
| 7310 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyUM038ORF805P (98% identity) | M.Hpyfe28ORF40P | |
| 50 | R | HpyT029ORF7135P (97% identity) | Hpyfe28ORF40P | |
| 55 | Eco57I restriction-modification methylase | |||
| 625 | biotin synthase | |||
| 630 | R | HpyOK303ORFYP (93% identity) | Hpyfe28ORF635P | |
| 635 | M | M.HpyF227ORFXP (97% identity) | M.Hpyfe28ORF635P | |
| 640 | DNA/RNA non-specific endonuclease | |||
| 6830 | copper response regulator transcription factor | |||
| 6835 | M | M.Hpyfe3ORF6920P (97% identity) | M.Hpyfe28ORF6835P | |
| 6840 | R | HpySG32ORF200P (95% identity) | Hpyfe28ORF6835P | |
| 6845 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2940 | type I glutamate--ammonia ligase | |||
| 2945 | R | HpyJA108GmrSDP (90% identity) | Hpyfe28GmrSD2P | |
| 2950 | 50S ribosomal protein L9 | |||
| 3525 | sel1 repeat family protein | |||
| 3530 | R | HpyK009GmrSD2P (95% identity) | Hpyfe28GmrSDP | |
| 3535 | NAD(P)H-dependent oxidoreductase | |||