Helicobacter pylori Hpfe029 |
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Putative Helicobacter pylori Hpfe029 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,569,933 bp
GenBank #: CP094144
REBASE acronym: Hpyfe29
Org_num: 57287
All begin MPG75_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3045 | phosphatase PAP2 family protein | |||
| ??? | M | M.HpyUM111ORF6770P (76% identity) | CAYNNNNNNCTT | M.Hpyfe29ORF3050P |
| 3060 | S | S.HpyJA108ORF2765P (79% identity) | CAYNNNNNNCTT | S.Hpyfe29ORF3050P |
| 3065 | R | HpySG13ORF4085P (96% identity) | CAYNNNNNNCTT | Hpyfe29ORF3050P |
| 3070 | hydroxyethylthiazole kinase | |||
| 3350 | cadmium-translocating P-type ATPase | |||
| 3355 | S | S.HpyME45XX (92% identity) | AAGNNNNNCTT | S.Hpyfe29ORF3355P |
| 3360 | outer membrane beta-barrel protein HofF | |||
| 7510 | M48 family metallopeptidase | |||
| 7515 | R | Hpyfe124ORF7480P (97% identity) | CRTANNNNNNNTC | Hpyfe29ORF7520P |
| 7520 | M | M.HpyL001XV (90% identity) | CRTANNNNNNNTC | M.Hpyfe29ORF7520P |
| 7525 | S | S.HpySG24V (98% identity) | CRTANNNNNNNTC | S.Hpyfe29ORF7520P |
| 7530 | 62 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | Hpy05ORFCP (90% identity) | Hpyfe29ORF55P | |
| 60 | 177 aa hypothetical protein | |||
| 145 | outer membrane protein | |||
| 150 | R | HpyU205IIIP (70% identity) | CCATC | Hpyfe29ORF160BP |
| 155 | R | R1.Hpy1100ORFRP (96% identity) | CCATC | Hpyfe29ORF160AP |
| 160 | M | M2.HpyV004III (93% identity) | CCATC | M1.Hpyfe29ORF160P |
| 165 | M | M1.HpyT026IV (99% identity) | CCATC | M2.Hpyfe29ORF160P |
| 170 | LptF/LptG family permease | |||
| 295 | ComF family protein | |||
| 300 | RM | HpyDU8AORFVP (98% identity) | CYANNNNNNTTC | Hpyfe29ORF300P |
| 305 | S | S1.HpyMA06ORF7170P (92% identity) | S1.Hpyfe29ORF300P | |
| 310 | S | S.HpyC117ORF7300P (43% identity) | S2.Hpyfe29ORF300P | |
| 315 | DNA polymerase I | |||
| 1420 | serine O-acetyltransferase | |||
| 1425 | R | Hpy39ORFJP (90% identity) | CATG | Hpyfe29ORF1430P |
| 1430 | M | M.HpyHP22ORF4195P (98% identity) | CATG | M.Hpyfe29ORF1430P |
| 1435 | HAD family hydrolase | |||
| 1890 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1895 | M | M.Hpyfe125ORF5630P (98% identity) | GCGC | M.Hpyfe29ORF1895P |
| 1900 | 144 aa hypothetical protein | |||
| 2070 | Laminin subunit alpha-2 precursor | |||
| 2075 | R | Hpyfe93ORF2050P (98% identity) | TCNNGA | Hpyfe29ORF2080P |
| 2080 | M | M.Hpyfe78ORF4965P (99% identity) | TCNNGA | M.Hpyfe29ORF2080P |
| 2085 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2780 | ATP-dependent helicase | |||
| 2785 | M | M.HpyC006VII (82% identity) | M.Hpyfe29ORF2785P | |
| 2790 | R | Hpyfe60ORF2770P (67% identity) | Hpyfe29ORF2785P | |
| 2795 | flagellar hook protein FlgE | |||
| 4735 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4740 | R | HpyK110VIIIP (99% identity) | GTAC | Hpyfe29ORF4745P |
| 4745 | M | M.HpyU011X (99% identity) | GTAC | M.Hpyfe29ORF4745P |
| 4750 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4830 | catalase | |||
| 4835 | R | Hpyfe79ORF4780P (99% identity) | ACGT | Hpyfe29ORF4840P |
| 4840 | M | M.Hpyfe124ORF4660P (99% identity) | ACGT | M.Hpyfe29ORF4840P |
| 4845 | GIY-YIG nuclease family protein | |||
| 4840 | DNA cytosine methyltransferase | |||
| 4845 | R | HpyU425ORF2350P (100% identity) | ACNGT | Hpyfe29ORF4850P |
| 4850 | M | M.HpySG12II (98% identity) | ACNGT | M.Hpyfe29ORF4850P |
| 4855 | translational GTPase TypA | |||
| 4860 | lipopolysaccharide heptosyltransferase family | |||
| 4865 | M | M.HpyK050IV (99% identity) | ATTAAT | M.Hpyfe29ORF4865P |
| 4870 | Hop family outer membrane protein HopJ/HopK | |||
| 5370 | group I intron-associated PD-(D/E)XK | |||
| 5375 | M | M.Hpyfe71ORF5430P (100% identity) | GCNGC | M.Hpyfe29ORF5375P |
| 5380 | translation elongation factor 4 | |||
| 5805 | AAA family ATPase | |||
| 5810 | M | M.Hpyfe97ORF6090P (100% identity) | CCGG | M.Hpyfe29ORF5810P |
| 5815 | R | HpyT026VP (98% identity) | CCGG | Hpyfe29ORF5810P |
| 5820 | 204 aa hypothetical protein | |||
| 5820 | 204 aa hypothetical protein | |||
| 5825 | M | M.Hpyfe8ORF1180P (99% identity) | TCGA | M.Hpyfe29ORF5825P |
| 5830 | exodeoxyribonuclease VII large subunit | |||
| 6630 | alpha-1,2-fucosyltransferase | |||
| 6635 | M | M.Hpyfe7ORF6570P (96% identity) | GATC | M.Hpyfe29ORF6635P |
| 6640 | 347 aa hypothetical protein | |||
| 6795 | sodium/proline symporter PutP | |||
| 6800 | M | M1.Hpyfe10ORF6925P (98% identity) | M1.Hpyfe29ORF6800P | |
| 6805 | M | M1.HpySG07IV (99% identity) | CCTC | M2.Hpyfe29ORF6800P |
| 6810 | agmatine deiminase | |||
| 6855 | adenine specific DNA methyltransferase 2 domain | |||
| 6860 | R | Hpy04ORFNP (99% identity) | GANTC | Hpyfe29ORF6865P |
| 6865 | M | M.Hpyfe113ORF3825P (100% identity) | GANTC | M.Hpyfe29ORF6865P |
| 6870 | carboxylating nicotinate-nucleotide | |||
| 6920 | copper response regulator transcription factor | |||
| 6925 | R | HpyF20JORF35P (98% identity) | GAAGA | Hpyfe29ORF6930P |
| 6930 | M | M2.HpyP30ORFKP (98% identity) | GAAGA | M1.Hpyfe29ORF6930P |
| 6935 | M | M2.HpyPE101VIII (98% identity) | GAAGA | M2.Hpyfe29ORF6930P |
| 6940 | EcoRV family type II restriction endonuclease | |||
| 6940 | EcoRV family type II restriction endonuclease | |||
| 6945 | M | M.HpyTW20IX (96% identity) | GATATC | M.Hpyfe29ORF6945P |
| 6950 | site-specific DNA-methyltransferase | |||
| 7405 | 103 aa hypothetical protein | |||
| 7410 | R | HpyK014XIP (99% identity) | TGCA | Hpyfe29ORF7415P |
| 7415 | M | M.HpyTW16IV (98% identity) | TGCA | M.Hpyfe29ORF7415P |
| 7420 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyQ59ORFWP (97% identity) | GWCAY | M.Hpyfe29ORF40P |
| 50 | R | HpyTW04ORF7140P (97% identity) | GWCAY | Hpyfe29ORF40P |
| 55 | class I SAM-dependent DNA methyltransferase | |||
| 645 | biotin synthase | |||
| ??? | R | Hpyfe11ORF650P (90% identity) | Hpyfe29ORF660P | |
| 660 | M | M.HpyOK318ORFHP (97% identity) | M.Hpyfe29ORF660P | |
| 665 | DNA/RNA non-specific endonuclease | |||
| 6945 | Dam family site-specific | |||
| 6950 | M | M.Hpybs3ORFXP (97% identity) | M.Hpyfe29ORF6950P | |
| 6955 | R | Hpyfe80ORF6895P (96% identity) | Hpyfe29ORF6950P | |
| 6960 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4110 | NAD(P)H-dependent oxidoreductase | |||
| 4115 | R | Hpyfe92GmrSDP (97% identity) | Hpyfe29GmrSD2P | |
| 4120 | sel1 repeat family protein | |||
| 4695 | 50S ribosomal protein L9 | |||
| 4700 | R | Hpyfe72GmrSDP (86% identity) | Hpyfe29GmrSDP | |
| 4705 | type I glutamate--ammonia ligase | |||