Helicobacter pylori Hpfe032 |
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Putative Helicobacter pylori Hpfe032 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,626,209 bp
GenBank #: CP094143
REBASE acronym: Hpyfe32
Org_num: 57288
All begin MPG16_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4735 | hydroxyethylthiazole kinase | |||
| 4740 | R | HpyTW10IXP (96% identity) | CYANNNNNNTTC | Hpyfe32ORF4750P |
| 4745 | S | S.HpyCA19ORF4185P (97% identity) | CYANNNNNNTTC | S.Hpyfe32ORF4750P |
| 4750 | M | M.Hpyfe118ORF3210P (97% identity) | CYANNNNNNTTC | M.Hpyfe32ORF4750P |
| 4755 | DNA cytosine methyltransferase | |||
| 7645 | M48 family metallopeptidase | |||
| 7650 | R | HpyMA08VP (97% identity) | CRTANNNNNNNTC | Hpyfe32ORF7655P |
| 7655 | M | M.HpyK035VI (96% identity) | CRTANNNNNNNTC | M.Hpyfe32ORF7655P |
| 7660 | S | S.HpyID9VII (97% identity) | CRTANNNNNNNTC | S.Hpyfe32ORF7655P |
| 7665 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 717 aa hypothetical protein | |||
| 60 | RM | Hpyfe106ORF50P (92% identity) | Hpyfe32ORF60P | |
| 65 | RNA-directed DNA polymerase | |||
| 145 | outer membrane protein | |||
| 150 | R | HpyMM10IIP (84% identity) | Hpyfe32ORF150P | |
| 155 | phospholipase D-like domain-containing protein | |||
| 285 | ComF family protein | |||
| 290 | RM | Hpy1100ORFQP (99% identity) | CYANNNNNNTTC | Hpyfe32ORF290P |
| 295 | S | S.Hpyfe28ORF285P (96% identity) | S.Hpyfe32ORF290P | |
| 300 | DNA polymerase I | |||
| 1425 | serine O-acetyltransferase | |||
| 1430 | R | HpySG24IP (96% identity) | CATG | Hpyfe32ORF1435P |
| 1435 | M | M.Hpyfe102ORF1420P (98% identity) | CATG | M.Hpyfe32ORF1435P |
| 1440 | HAD family hydrolase | |||
| 1895 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1900 | M | M.HpyJ015XII (98% identity) | GCGC | M.Hpyfe32ORF1900P |
| 1905 | 144 aa hypothetical protein | |||
| 2080 | Laminin subunit alpha-2 precursor | |||
| 2085 | R | Hpyfe93ORF2050P (100% identity) | TCNNGA | Hpyfe32ORF2090P |
| 2090 | M | M.HpyFD577ORFD1P (99% identity) | TCNNGA | M.Hpyfe32ORF2090P |
| 2095 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2885 | ATP-dependent helicase | |||
| 2890 | M | M.Hpyfe19ORF2720P (98% identity) | GTNNAC | M.Hpyfe32ORF2890P |
| ??? | R | Hpy271ORFAP (92% identity) | GTNNAC | Hpyfe32ORF2890P |
| 2895 | flagellar hook protein FlgE | |||
| 3930 | KAP family NTPase | |||
| 3935 | RM | HpyJSHR6ORF7360P (91% identity) | Hpyfe32ORF3935P | |
| 3940 | (Fe-S)-binding protein | |||
| 4750 | type I restriction-modification system subunit | |||
| 4755 | M | M.HpysHP34ORF6260P (99% identity) | GGCC | M.Hpyfe32ORF4755P |
| 4760 | R | HpyBS22ORF3200P (97% identity) | GGCC | Hpyfe32ORF4755P |
| 4765 | phosphatase PAP2 family protein | |||
| 4910 | catalase | |||
| 4915 | R | HpyK119ORF2350P (100% identity) | ACGT | Hpyfe32ORF4920P |
| 4920 | M | M.Hpyfe96ORF4835P (99% identity) | ACGT | M.Hpyfe32ORF4920P |
| 4925 | GIY-YIG nuclease family protein | |||
| 4920 | DNA cytosine methyltransferase | |||
| 4925 | R | Hpybs1ORFVP (100% identity) | ACNGT | Hpyfe32ORF4930P |
| 4930 | M | M.Hpyfe8ORF2145P (97% identity) | ACNGT | M.Hpyfe32ORF4930P |
| 4935 | translational GTPase TypA | |||
| 4940 | lipopolysaccharide heptosyltransferase family | |||
| 4945 | M | M.Hpyfe55ORF4815P (98% identity) | ATTAAT | M.Hpyfe32ORF4945P |
| 4950 | Hop family outer membrane protein HopJ/HopK | |||
| 5660 | 125 aa hypothetical protein | |||
| 5665 | M | M.Hpyfe124ORF5400P (99% identity) | CTNAG | M.Hpyfe32ORF5665P |
| 5670 | R | HpySG26VIP (95% identity) | CTNAG | Hpyfe32ORF5665P |
| 5675 | polysaccharide deacetylase | |||
| 5910 | AAA family ATPase | |||
| 5915 | M | M.HpyUM077ORF765P (99% identity) | CCGG | M.Hpyfe32ORF5915P |
| 5920 | R | HpyKA2ORF1365P (98% identity) | CCGG | Hpyfe32ORF5915P |
| 5925 | 204 aa hypothetical protein | |||
| 5925 | 204 aa hypothetical protein | |||
| 5930 | M | M.HpyK110XIII (98% identity) | TCGA | M.Hpyfe32ORF5930P |
| 5935 | exodeoxyribonuclease VII large subunit | |||
| 6340 | pseudaminic acid synthase | |||
| 6345 | R | R2.HpyK042ORF940P (96% identity) | R1.Hpyfe32ORF6345P | |
| 6350 | R | R2.HpyK005ORF5855P (97% identity) | R2.Hpyfe32ORF6345P | |
| 6355 | elongation factor P | |||
| 6735 | alpha-1,2-fucosyltransferase | |||
| 6740 | M | M.HpyJA108VII (99% identity) | GATC | M.Hpyfe32ORF6740P |
| 6745 | R | Hpyfe40ORF6460P (97% identity) | GATC | Hpyfe32ORF6740P |
| 6755 | ACP S-malonyltransferase | |||
| 6925 | DNA cytosine methyltransferase | |||
| 6930 | R | Hpyfe24ORF6955P (100% identity) | GTSAC | Hpyfe32ORF6935P |
| 6935 | M | M.HpyTW10IV (100% identity) | GTSAC | M.Hpyfe32ORF6935P |
| 6940 | HNH endonuclease | |||
| 6935 | site-specific DNA-methyltransferase | |||
| 6940 | R | Hpyfe49ORF6980P (98% identity) | CCTC | Hpyfe32ORF6945P |
| 6945 | M | M2.HpySG02IVP (98% identity) | CCTC | M1.Hpyfe32ORF6945P |
| 6950 | M | M1.Hpy1291ORF1470P (99% identity) | CCTC | M2.Hpyfe32ORF6945P |
| 6955 | agmatine deiminase | |||
| 7000 | DNA methyltransferase | |||
| 7005 | R | Hpyfe112ORF7265P (98% identity) | GANTC | Hpyfe32ORF7010P |
| 7010 | M | M.HpySG12VI (99% identity) | GANTC | M.Hpyfe32ORF7010P |
| 7015 | 335 aa hypothetical protein | |||
| 7015 | 335 aa hypothetical protein | |||
| 7020 | RM | Hpyfe5ORF7020P (65% identity) | Hpyfe32ORF7020P | |
| 7025 | carboxylating nicotinate-nucleotide | |||
| 7075 | copper response regulator transcription factor | |||
| 7080 | R | HpySG14VIP (98% identity) | GAAGA | Hpyfe32ORF7085P |
| 7085 | M | M1.Hpyfe36ORF6935P (99% identity) | GAAGA | M1.Hpyfe32ORF7085P |
| 7090 | M | M2.Hpyfe49ORF7125P (99% identity) | GAAGA | M2.Hpyfe32ORF7085P |
| 7095 | site-specific DNA-methyltransferase | |||
| 7555 | 134 aa hypothetical protein | |||
| 7560 | R | Hpyfe97ORF7685P (99% identity) | TGCA | Hpyfe32ORF7565P |
| 7565 | M | M.HpyTW10VII (99% identity) | TGCA | M.Hpyfe32ORF7565P |
| 7570 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyMT5125ORF6970P (94% identity) | M.Hpyfe32ORF40P | |
| 50 | R | HpyK007ORF7115P (96% identity) | Hpyfe32ORF40P | |
| 55 | 717 aa hypothetical protein | |||
| 635 | biotin synthase | |||
| 640 | R | Hpyfe122ORF630P (92% identity) | Hpyfe32ORF645P | |
| 645 | M | M.Hpyfe13ORF805P (96% identity) | M.Hpyfe32ORF645P | |
| 650 | ABC transporter ATP-binding protein/permease | |||
| 7090 | site-specific DNA-methyltransferase | |||
| 7095 | M | M.Hpyfe80ORF6895P (98% identity) | M.Hpyfe32ORF7095P | |
| 7100 | R | Hpy28ORF34P (93% identity) | Hpyfe32ORF7095P | |
| 7105 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3125 | type I glutamate--ammonia ligase | |||
| 3130 | R | HpyOK302GmrSDP (88% identity) | Hpyfe32GmrSDP | |
| 3135 | 50S ribosomal protein L9 | |||
| 3700 | sel1 repeat family protein | |||
| 3705 | R | HpyYN483GmrSD2P (96% identity) | Hpyfe32GmrSD2P | |
| 3710 | NAD(P)H-dependent oxidoreductase | |||