Helicobacter pylori Hpfe033 |
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Putative Helicobacter pylori Hpfe033 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,559,352 bp
GenBank #: CP094142
REBASE acronym: Hpyfe33
Org_num: 57289
All begin MPG02_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4300 | 54 aa hypothetical protein | |||
| 4305 | S | S.Hpyfe89ORF4905P (97% identity) | GAANNNNNNNTAYG | S.Hpyfe33ORF4305P |
| 4310 | cadmium-translocating P-type ATPase | |||
| 4605 | hydroxyethylthiazole kinase | |||
| 4610 | R | HpyK019XVP (96% identity) | GAANNNNNNNTAYG | Hpyfe33ORF4620P |
| 4615 | S | S.Hpyfe33ORF4305P (97% identity) | GAANNNNNNNTAYG | S.Hpyfe33ORF4620P |
| 4620 | M | M.HpyKG10ORF2500P (96% identity) | GAANNNNNNNTAYG | M.Hpyfe33ORF4620P |
| 4625 | phosphatase PAP2 family protein | |||
| 4875 | type I restriction endonuclease | |||
| 4880 | R | Hpyfe104ORF3000P (70% identity) | CCANNNNNNTC | Hpyfe33ORF4885P |
| 4885 | M | M.HpyK024ORF2270P (96% identity) | CCANNNNNNTC | M.Hpyfe33ORF4885P |
| 4890 | S | S.HpyUM085ORF90P (99% identity) | CCANNNNNNTC | S.Hpyfe33ORF4885P |
| 4900 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | HpyJA114ORF7330P (90% identity) | Hpyfe33ORF55P | |
| 60 | transcription termination factor NusA | |||
| 255 | ComF family protein | |||
| 260 | RM | Hpyfe12ORF280P (98% identity) | CYANNNNNNTTC | Hpyfe33ORF260P |
| 265 | S | S.HpyU206ORF7305P (44% identity) | S1.Hpyfe33ORF260P | |
| 270 | S | S2.HpyML2ORFAP (82% identity) | S2.Hpyfe33ORF260P | |
| 275 | DNA polymerase I | |||
| 1390 | IceA2 protein | |||
| 1395 | M | M.Hpybs1ORFZP (68% identity) | CATG | M.Hpyfe33ORF1395P |
| 1400 | HAD family hydrolase | |||
| 1845 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1850 | M | M.Hpyfe99ORF2015P (99% identity) | GCGC | M.Hpyfe33ORF1850P |
| 1855 | R | HpySG15XVIIIP (100% identity) | GCGC | Hpyfe33ORF1850P |
| 1860 | 144 aa hypothetical protein | |||
| 2030 | Laminin subunit alpha-2 precursor | |||
| 2035 | R | Hpyfe59ORF2060P (100% identity) | TCNNGA | Hpyfe33ORF2040P |
| 2040 | M | M.Hpyfe88ORF2055P (100% identity) | TCNNGA | M.Hpyfe33ORF2040P |
| 2045 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2690 | ATP-dependent helicase | |||
| 2695 | M | M.HpyKG6XI (97% identity) | GTNNAC | M.Hpyfe33ORF2695P |
| 2700 | R | HpyK115ORF4415P (97% identity) | GTNNAC | Hpyfe33ORF2695P |
| 2705 | flagellar hook protein FlgE | |||
| 2900 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2905 | M | M.Hpyfe85ORF4690P (99% identity) | GTAC | M.Hpyfe33ORF2905P |
| 2910 | R | Hpy192ORFJP (93% identity) | GTAC | Hpyfe33ORF2905P |
| 2915 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3705 | (Fe-S)-binding protein | |||
| 3710 | RM | HpyP87ORFCP (92% identity) | Hpyfe33ORF3710P | |
| 3715 | outer membrane protein | |||
| 3805 | 3-5 exonuclease | |||
| 3810 | M | M.HpyMKM5ORF723P (99% identity) | CCNNGG | M.Hpyfe33ORF3810P |
| 3815 | R | HpyPF16VP (100% identity) | CCNNGG | Hpyfe33ORF3810P |
| 3820 | 3-5 exonuclease | |||
| 4450 | osmoprotection protein | |||
| 4455 | R | Hpyfe78ORF3885P (100% identity) | CGWCG | Hpyfe33ORF4460P |
| 4460 | M | M.HpySG32V (100% identity) | CGWCG | M.Hpyfe33ORF4460P |
| 4465 | ABC transporter permease/substrate-binding | |||
| 4770 | catalase | |||
| 4775 | R | HpySG08IIP (100% identity) | ACNGT | Hpyfe33ORF4780P |
| 4780 | M | M.HpyQ56ORFVP (99% identity) | ACNGT | M.Hpyfe33ORF4780P |
| 4785 | translational GTPase TypA | |||
| 4790 | lipopolysaccharide heptosyltransferase family | |||
| 4795 | M | M.Hpyfe10ORF4950P (98% identity) | ATTAAT | M.Hpyfe33ORF4795P |
| 4800 | Hop family outer membrane protein HopJ/HopK | |||
| 5510 | 125 aa hypothetical protein | |||
| 5515 | M | M.Hpyfe59ORF5575P (100% identity) | CTNAG | M.Hpyfe33ORF5515P |
| 5520 | R | HpyJA101VIIP (99% identity) | CTNAG | Hpyfe33ORF5515P |
| 5525 | polysaccharide deacetylase | |||
| 5760 | AAA family ATPase | |||
| 5765 | M | M.Hpyfe93ORF5875P (100% identity) | CCGG | M.Hpyfe33ORF5765P |
| 5770 | R | HpyMA20IIP (96% identity) | CCGG | Hpyfe33ORF5765P |
| 5775 | 204 aa hypothetical protein | |||
| 5775 | 204 aa hypothetical protein | |||
| 5780 | M | M.HpyGU1CORF2850P (99% identity) | TCGA | M.Hpyfe33ORF5780P |
| 5785 | exodeoxyribonuclease VII large subunit | |||
| 6575 | alpha-1,2-fucosyltransferase | |||
| 6580 | M | M.HpyJSHR31ORF13330P (98% identity) | GATC | M.Hpyfe33ORF6580P |
| 6585 | 357 aa hypothetical protein | |||
| 6770 | sodium/proline symporter PutP | |||
| 6775 | R | Hpyfe64ORF6995P (97% identity) | CCTC | Hpyfe33ORF6780P |
| 6780 | M | M1.HpyJSHR31ORF13790P (99% identity) | CCTC | M1.Hpyfe33ORF6780P |
| 6785 | M | M1.HpyQ59ORFFP (98% identity) | CCTC | M2.Hpyfe33ORF6780P |
| 6790 | agmatine deiminase | |||
| 6835 | DNA methyltransferase | |||
| 6840 | R | Hpyfe103ORF7005P (98% identity) | GANTC | Hpyfe33ORF6845P |
| 6845 | M | M.HpyAR9IV (99% identity) | GANTC | M.Hpyfe33ORF6845P |
| 6850 | N-6 DNA methylase | |||
| 6845 | site-specific DNA-methyltransferase | |||
| 6850 | RM | HpyP82ORFMP (89% identity) | Hpyfe33ORF6850P | |
| 6855 | carboxylating nicotinate-nucleotide | |||
| 7380 | 90 aa hypothetical protein | |||
| 7385 | R | HpyUM032VIIIP (99% identity) | TGCA | Hpyfe33ORF7390P |
| 7390 | M | M.Hpyfe19ORF7540P (99% identity) | TGCA | M.Hpyfe33ORF7390P |
| 7395 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyV004ORF7125P (97% identity) | M.Hpyfe33ORF40P | |
| 50 | R | Hpy271ORFZP (97% identity) | Hpyfe33ORF40P | |
| 55 | class I SAM-dependent DNA methyltransferase | |||
| 610 | biotin synthase | |||
| 615 | R | Hpyfe122ORF630P (95% identity) | Hpyfe33ORF620P | |
| 620 | M | M.HpyK023ORF6585P (98% identity) | M.Hpyfe33ORF620P | |
| 625 | DNA/RNA non-specific endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2945 | type I glutamate--ammonia ligase | |||
| 2950 | R | Hpyfe8GmrSDP (99% identity) | Hpyfe33GmrSDP | |
| 2955 | 50S ribosomal protein L9 | |||
| 3520 | sel1 repeat family protein | |||
| 3525 | R | HpyJSHR6GmrSDP (96% identity) | Hpyfe33GmrSD2P | |
| 3530 | NAD(P)H-dependent oxidoreductase | |||