Helicobacter pylori Hpfe035 |
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Putative Helicobacter pylori Hpfe035 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,594,448 bp
GenBank #: CP094140
REBASE acronym: Hpyfe35
Org_num: 57290
All begin MPG83_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3115 | phosphatase PAP2 family protein | |||
| 3120 | M | M.Hpyfe118ORF3210P (96% identity) | M.Hpyfe35ORF3120P | |
| 3125 | S | S.Hpyfe54ORF3025P (97% identity) | S.Hpyfe35ORF3120P | |
| 3130 | R | Hpyfe72ORF2975P (96% identity) | Hpyfe35ORF3120P | |
| 3135 | hydroxyethylthiazole kinase | |||
| 3430 | cadmium-translocating P-type ATPase | |||
| 3435 | S | S.Hpy464ORF2800P (97% identity) | CCANNNNNNCTT | S.Hpyfe35ORF3435P |
| 3440 | outer membrane beta-barrel protein HofF | |||
| 4995 | motility associated factor glycosyltransferase | |||
| 5000 | R | HpyT027VIP (95% identity) | CTANNNNNNTC | Hpyfe35ORF5005P |
| 5005 | M | M.Hpyfe74ORF5025P (98% identity) | CTANNNNNNTC | M.Hpyfe35ORF5005P |
| 5010 | S | S.Hpyfe73ORF4910P (98% identity) | CTANNNNNNTC | S.Hpyfe35ORF5005P |
| 5020 | RNA degradosome polyphosphate kinase | |||
| 7565 | M48 family metallopeptidase | |||
| 7570 | R | Hpyfe12ORF7725P (97% identity) | CCANNNNNNNTG | Hpyfe35ORF7575P |
| 7575 | M | M.HpyOK03ORFGP (96% identity) | CCANNNNNNNTG | M.Hpyfe35ORF7575P |
| 7580 | S | S.HpySP12ORF6680P (97% identity) | CCANNNNNNNTG | S.Hpyfe35ORF7575P |
| 7585 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 45 | type III restriction-modification system | |||
| 50 | RM | Hpyfe112ORF60P (92% identity) | Hpyfe35ORF50P | |
| 55 | transcription termination factor NusA | |||
| 540 | UDP-N-acetylmuramate dehydrogenase | |||
| 545 | M | M.HpyMKM1ORF1324P (99% identity) | M.Hpyfe35ORF545P | |
| 550 | R | HpyK006ORF6595P (99% identity) | Hpyfe35ORF545P | |
| 555 | glycosyltransferase family 8 protein | |||
| 1385 | serine O-acetyltransferase | |||
| 1390 | R | Hpyfe40ORF1425P (93% identity) | CATG | Hpyfe35ORF1395P |
| 1395 | M | M.HpyHK840ORFUP (98% identity) | CATG | M.Hpyfe35ORF1395P |
| 1400 | HAD family hydrolase | |||
| 1850 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1855 | M | M.Hpyfe107ORF6245P (98% identity) | GCGC | M.Hpyfe35ORF1855P |
| 1860 | 144 aa hypothetical protein | |||
| 2035 | Laminin subunit alpha-2 precursor | |||
| 2040 | R | HpyTW09IIP (99% identity) | TCNNGA | Hpyfe35ORF2045P |
| 2045 | M | M.HpyOK310ORFXP (98% identity) | TCNNGA | M.Hpyfe35ORF2045P |
| 2050 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2840 | ATP-dependent helicase | |||
| 2845 | M | M.Hpyfe38ORF2685P (97% identity) | GTNNAC | M.Hpyfe35ORF2845P |
| 2850 | R | Hpyfe19ORF2720P (97% identity) | GTNNAC | Hpyfe35ORF2845P |
| 2855 | flagellar hook protein FlgE | |||
| 3945 | (Fe-S)-binding protein | |||
| 3950 | RM | HpyQ59ORFKAP (51% identity) | Hpyfe35ORF3950P | |
| 3955 | 450 aa hypothetical protein | |||
| 4790 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4795 | R | Hpy4125ORFXP (92% identity) | GTAC | Hpyfe35ORF4800P |
| 4800 | M | M.HpyAR10VIII (98% identity) | GTAC | M.Hpyfe35ORF4800P |
| 4805 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4890 | catalase | |||
| 4895 | R | Hpyfe81ORF2760P (100% identity) | ACGT | Hpyfe35ORF4900P |
| 4900 | M | M.HpyJ028ORF2570P (99% identity) | ACGT | M.Hpyfe35ORF4900P |
| 4905 | GIY-YIG nuclease family protein | |||
| 4900 | DNA cytosine methyltransferase | |||
| 4905 | R | Hpyfe97ORF5110P (100% identity) | ACNGT | Hpyfe35ORF4910P |
| 4910 | M | M.HpySG07ORF4350P (98% identity) | ACNGT | M.Hpyfe35ORF4910P |
| 4915 | translational GTPase TypA | |||
| 4920 | lipopolysaccharide heptosyltransferase family | |||
| 4925 | M | M.Hpy271ORFLP (98% identity) | ATTAAT | M.Hpyfe35ORF4925P |
| 4930 | Hop family outer membrane protein HopJ/HopK | |||
| 5865 | AAA family ATPase | |||
| 5870 | M | M.HpyK007V (99% identity) | CCGG | M.Hpyfe35ORF5870P |
| 5875 | R | Hpyfe16ORF2285P (96% identity) | CCGG | Hpyfe35ORF5870P |
| 5880 | 204 aa hypothetical protein | |||
| 5880 | 204 aa hypothetical protein | |||
| 5885 | M | M.Hpyfe115ORF5850P (100% identity) | TCGA | M.Hpyfe35ORF5885P |
| 5890 | exodeoxyribonuclease VII large subunit | |||
| 6685 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6690 | M | M.Hpyfe32ORF6740P (98% identity) | GATC | M.Hpyfe35ORF6690P |
| 6695 | R | Hpy17ORF1108P (96% identity) | GATC | Hpyfe35ORF6690P |
| 6705 | ACP S-malonyltransferase | |||
| 6835 | sodium/proline symporter PutP | |||
| 6840 | M | M2.HpyIS2VIP (81% identity) | M1.Hpyfe35ORF6840P | |
| 6845 | M | M1.HpyMKM1ORF56P (97% identity) | CCTC | M2.Hpyfe35ORF6840P |
| 6850 | agmatine deiminase | |||
| 6895 | DNA methyltransferase | |||
| 6900 | R | Hpyfe115ORF7170P (51% identity) | Hpyfe35ORF6915P | |
| 6905 | 245 aa hypothetical protein | |||
| 6910 | 56 aa hypothetical protein | |||
| 6915 | M | M.Hpyfe83ORF6875P (40% identity) | M.Hpyfe35ORF6915P | |
| 6920 | 335 aa hypothetical protein | |||
| 6920 | 335 aa hypothetical protein | |||
| 6925 | RM | HpySG32ORF275P (96% identity) | Hpyfe35ORF6925P | |
| 6930 | carboxylating nicotinate-nucleotide | |||
| 6980 | copper response regulator transcription factor | |||
| 6985 | R | HpyHP32VIIIP (98% identity) | GAAGA | Hpyfe35ORF6990P |
| 6990 | M | M2.HpyOK88ORFOP (99% identity) | GAAGA | M1.Hpyfe35ORF6990P |
| 6995 | M | M2.Hpyfe78ORF7125P (99% identity) | GAAGA | M2.Hpyfe35ORF6990P |
| 7000 | site-specific DNA-methyltransferase | |||
| 7460 | 112 aa hypothetical protein | |||
| 7465 | R | Hpyfe33ORF7390P (98% identity) | TGCA | Hpyfe35ORF7470P |
| 7470 | M | M.HpyKG7XII (98% identity) | TGCA | M.Hpyfe35ORF7470P |
| 7475 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyPE113ORF7420P (96% identity) | M.Hpyfe35ORF40P | |
| 45 | R | Hpyfe124ORF40P (96% identity) | Hpyfe35ORF40P | |
| 50 | Eco57I restriction-modification methylase | |||
| 610 | type III restriction endonuclease subunit R | |||
| 615 | R | HpyK033ORF6680P (96% identity) | Hpyfe35ORF620P | |
| ??? | M | M.Hpyfe12ORF630P (96% identity) | M.Hpyfe35ORF620P | |
| 625 | DNA/RNA non-specific endonuclease | |||
| 6995 | site-specific DNA-methyltransferase | |||
| ??? | M | M.HpySG09ORF200P (97% identity) | M.Hpyfe35ORF7000P | |
| 7005 | R | Hpybs2ORFA1P (95% identity) | Hpyfe35ORF7000P | |
| 7010 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4175 | NAD(P)H-dependent oxidoreductase | |||
| 4180 | R | HpyJA101GmrSD2P (95% identity) | Hpyfe35GmrSDP | |
| 4185 | sel1 repeat family protein | |||
| 4750 | 50S ribosomal protein L9 | |||
| 4755 | R | HpyMA08GmrSDP (91% identity) | Hpyfe35GmrSD2P | |
| 4760 | type I glutamate--ammonia ligase | |||