Helicobacter pylori Hpfe036 |
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Putative Helicobacter pylori Hpfe036 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,561,930 bp
GenBank #: CP094139
REBASE acronym: Hpyfe36
Org_num: 57291
All begin MPG53_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2990 | type I restriction endonuclease | |||
| 2995 | M | M.Hpyfe113ORF10P (96% identity) | CAANNNNNNNCTT | M.Hpyfe36ORF2995P |
| 3000 | S | S.HpyH005XIV (96% identity) | CAANNNNNNNCTT | S.Hpyfe36ORF2995P |
| 3005 | R | Hpyfe5ORF3195P (96% identity) | CAANNNNNNNCTT | Hpyfe36ORF2995P |
| 3010 | hydroxyethylthiazole kinase | |||
| 4900 | type I restriction endonuclease | |||
| 4905 | R | Hpyfe8ORF2045P (96% identity) | CACNNNNNTC | Hpyfe36ORF4910P |
| 4910 | M | M.HpyF228ORFKP (96% identity) | CACNNNNNTC | M.Hpyfe36ORF4910P |
| 4915 | S | S.HpyLIM7XI (98% identity) | CACNNNNNTC | S.Hpyfe36ORF4910P |
| 4925 | RNA degradosome polyphosphate kinase | |||
| 7500 | M48 family metallopeptidase | |||
| 7505 | R | HpyK044ORF555P (97% identity) | CRTANNNNNNNTG | Hpyfe36ORF7510P |
| 7510 | M | M.HpyK110XI (97% identity) | CRTANNNNNNNTG | M.Hpyfe36ORF7510P |
| 7515 | CAAX protease | |||
| 7520 | S | S.Hpyfe2ORF7690P (95% identity) | CRTANNNNNNNTG | S.Hpyfe36ORF7510P |
| 7525 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | Hpy154ORF7610P (93% identity) | Hpyfe36ORF55P | |
| 60 | 175 aa hypothetical protein | |||
| 285 | ComF family protein | |||
| 290 | RM | Hpyfe124ORF275P (99% identity) | CYANNNNNNTTC | Hpyfe36ORF290P |
| 295 | S | S1.HpyNCI38ORFRP (98% identity) | CYANNNNNNNTRG | S1.Hpyfe36ORF290P |
| 300 | S | S2.Hpyfe62ORF295P (94% identity) | S2.Hpyfe36ORF290P | |
| 305 | DNA polymerase I | |||
| 1415 | serine O-acetyltransferase | |||
| 1420 | R | HpyJ028IP (94% identity) | CATG | Hpyfe36ORF1425P |
| 1425 | M | M.HpyTW21I (99% identity) | CATG | M.Hpyfe36ORF1425P |
| 1430 | HAD family hydrolase | |||
| 1865 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1870 | M | M.Hpyfe96ORF1925P (97% identity) | GCGC | M.Hpyfe36ORF1870P |
| 1875 | 144 aa hypothetical protein | |||
| 2045 | Laminin subunit alpha-2 precursor | |||
| 2050 | R | HpyMA21XIVP (99% identity) | TCNNGA | Hpyfe36ORF2055P |
| 2055 | M | M.HpyDU8AORFRP (99% identity) | TCNNGA | M.Hpyfe36ORF2055P |
| 2060 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2715 | ATP-dependent helicase | |||
| 2720 | M | M.HpyIS2XIII (98% identity) | GTNNAC | M.Hpyfe36ORF2720P |
| 2725 | R | HpyAR9VIIP (96% identity) | GTNNAC | Hpyfe36ORF2720P |
| 2730 | flagellar hook protein FlgE | |||
| 3820 | (Fe-S)-binding protein | |||
| 3825 | RM | Hpyfe58ORF4040P (93% identity) | Hpyfe36ORF3825P | |
| 3830 | outer membrane protein | |||
| 4795 | restriction endonuclease | |||
| 4800 | M | M.Hpyfe81ORF2760P (100% identity) | ACGT | M.Hpyfe36ORF4800P |
| 4805 | GIY-YIG nuclease family protein | |||
| 4800 | DNA cytosine methyltransferase | |||
| 4805 | R | Hpyfe97ORF5110P (100% identity) | ACNGT | Hpyfe36ORF4810P |
| 4810 | M | M.HpySG24II (98% identity) | ACNGT | M.Hpyfe36ORF4810P |
| 4815 | translational GTPase TypA | |||
| 4820 | lipopolysaccharide heptosyltransferase family | |||
| 4825 | M | M.HpyK050IV (98% identity) | ATTAAT | M.Hpyfe36ORF4825P |
| 4830 | Hop family outer membrane protein HopJ/HopK | |||
| 5790 | AAA family ATPase | |||
| 5795 | M | M.HpyQ59ORFBP (100% identity) | CCGG | M.Hpyfe36ORF5795P |
| 5800 | R | HpySG04IVP (97% identity) | CCGG | Hpyfe36ORF5795P |
| 5805 | 204 aa hypothetical protein | |||
| 5805 | 204 aa hypothetical protein | |||
| 5810 | M | M.Hpyfe93ORF5890P (100% identity) | TCGA | M.Hpyfe36ORF5810P |
| 5815 | exodeoxyribonuclease VII large subunit | |||
| 6215 | pseudaminic acid synthase | |||
| 6220 | R | R2.HpyNP04ORF1110P (97% identity) | R1.Hpyfe36ORF6220P | |
| 6225 | R | R1.HpyFD506ORFL1P (97% identity) | R2.Hpyfe36ORF6220P | |
| 6230 | elongation factor P | |||
| 6620 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6625 | M | M.HpyTW08II (98% identity) | GATC | M.Hpyfe36ORF6625P |
| 6630 | R | Hpyfe13ORF6650P (98% identity) | GATC | Hpyfe36ORF6625P |
| 6640 | ACP S-malonyltransferase | |||
| 6785 | sodium/proline symporter PutP | |||
| 6790 | M | M1.Hpyfe102ORF6915P (100% identity) | CCTC | M1.Hpyfe36ORF6790P |
| 6795 | M | M1.HpyK111IV (99% identity) | CCTC | M2.Hpyfe36ORF6790P |
| 6800 | agmatine deiminase | |||
| 6845 | DNA methyltransferase | |||
| 6850 | R | Hpyfe63ORF7670P (98% identity) | GANTC | Hpyfe36ORF6855P |
| 6855 | M | M.HpyT027IX (99% identity) | GANTC | M.Hpyfe36ORF6855P |
| 6860 | DNA methyltransferase | |||
| 6855 | site-specific DNA-methyltransferase | |||
| ??? | RM | HpySG17ORF290P (89% identity) | Hpyfe36ORF6860P | |
| 6875 | carboxylating nicotinate-nucleotide | |||
| 6925 | copper response regulator transcription factor | |||
| 6930 | R | Hpyfe61ORF7120P (98% identity) | GAAGA | Hpyfe36ORF6935P |
| 6935 | M | M2.HpyQ59ORFDP (100% identity) | GAAGA | M1.Hpyfe36ORF6935P |
| 6940 | M | M2.Hpyfe86ORF7035P (98% identity) | GAAGA | M2.Hpyfe36ORF6935P |
| 6945 | site-specific DNA-methyltransferase | |||
| 7405 | DUF5343 domain-containing protein | |||
| 7410 | M | M.HpyK008ORF7360P (99% identity) | M.Hpyfe36ORF7410P | |
| 7415 | type II restriction endonuclease | |||
| 7410 | DNA cytosine methyltransferase | |||
| 7415 | R | HpyOK316ORFKP (98% identity) | TGCA | Hpyfe36ORF7420P |
| 7420 | M | M.Hpyfe48ORF7610P (98% identity) | TGCA | M.Hpyfe36ORF7420P |
| 7425 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpyfe110ORF40P (97% identity) | M.Hpyfe36ORF40P | |
| 50 | R | HpyOK36ORFPP (97% identity) | Hpyfe36ORF40P | |
| 55 | Eco57I restriction-modification methylase | |||
| 640 | biotin synthase | |||
| 645 | R | Hpy321ORFUP (93% identity) | Hpyfe36ORF650P | |
| 650 | M | M.HpyDU8AORFUP (97% identity) | M.Hpyfe36ORF650P | |
| 655 | DNA/RNA non-specific endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4050 | NAD(P)H-dependent oxidoreductase | |||
| 4055 | R | HpyMA23GmrSD2P (94% identity) | Hpyfe36GmrSD2P | |
| 4060 | sel1 repeat family protein | |||
| 4640 | 50S ribosomal protein L9 | |||
| 4645 | R | Hpyfe52GmrSDP (92% identity) | Hpyfe36GmrSDP | |
| 4650 | type I glutamate--ammonia ligase | |||