Helicobacter pylori Hpfe037 |
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Putative Helicobacter pylori Hpfe037 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,596,715 bp
GenBank #: CP094138
REBASE acronym: Hpyfe37
Org_num: 57292
All begin MPG35_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4245 | outer membrane beta-barrel protein HofF | |||
| 4250 | S | S.Hpyfe61ORF4835P (97% identity) | CCANNNNNNNNTGG | S.Hpyfe37ORF4250P |
| 4255 | cadmium-translocating P-type ATPase | |||
| 4545 | hydroxyethylthiazole kinase | |||
| 4550 | R | Hpyfe104ORF2725P (98% identity) | CTANNNNNNNTGT | Hpyfe37ORF4560P |
| 4555 | S | S.Hpyfe114ORF4605P (96% identity) | CTANNNNNNNTGT | S.Hpyfe37ORF4560P |
| 4560 | M | M.Hpyfe61ORF4835P (96% identity) | CTANNNNNNNTGT | M.Hpyfe37ORF4560P |
| 4565 | DNA cytosine methyltransferase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | 708 aa hypothetical protein | |||
| 55 | RM | HpyOK316ORFHP (93% identity) | Hpyfe37ORF55P | |
| 60 | transcription termination factor NusA | |||
| 260 | ComF family protein | |||
| 265 | RM | Hpyfe104ORF265P (99% identity) | CYANNNNNNTTC | Hpyfe37ORF265P |
| 270 | S | S.HpyPE102ORF7195P (95% identity) | S.Hpyfe37ORF265P | |
| 275 | DNA polymerase I | |||
| 1395 | IceA2 protein | |||
| 1400 | M | M.Hpyfe104ORF4830P (99% identity) | CATG | M.Hpyfe37ORF1400P |
| 1405 | HAD family hydrolase | |||
| 1840 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1845 | M | M.HpyJA105XIII (97% identity) | GCGC | M.Hpyfe37ORF1845P |
| 1850 | 144 aa hypothetical protein | |||
| 2020 | Laminin subunit alpha-2 precursor | |||
| 2025 | R | Hpyfe104ORF5925P (100% identity) | TCNNGA | Hpyfe37ORF2030P |
| 2030 | M | M.Hpyfe104ORF5925P (100% identity) | TCNNGA | M.Hpyfe37ORF2030P |
| 2035 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2675 | ATP-dependent helicase | |||
| 2680 | M | M.Hpy422ORF4775P (98% identity) | GTNNAC | M.Hpyfe37ORF2680P |
| 2685 | R | Hpyfe114ORF2725P (97% identity) | GTNNAC | Hpyfe37ORF2680P |
| 2690 | flagellar hook protein FlgE | |||
| 2875 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2880 | M | M.Hpyfe40ORF2935P (100% identity) | GTAC | M.Hpyfe37ORF2880P |
| 2885 | R | Hpyfe115ORF4735P (95% identity) | GTAC | Hpyfe37ORF2880P |
| 2890 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3735 | outer membrane protein | |||
| 3740 | RM | Hpy6ORF7530P (89% identity) | Hpyfe37ORF3740P | |
| 3745 | (Fe-S)-binding protein | |||
| 4390 | osmoprotection protein | |||
| 4395 | R | Hpyfe104ORF2565P (100% identity) | CGWCG | Hpyfe37ORF4400P |
| 4400 | M | M.Hpyfe8ORF2470P (100% identity) | CGWCG | M.Hpyfe37ORF4400P |
| 4405 | ABC transporter permease/substrate-binding | |||
| 4560 | type I restriction-modification system subunit | |||
| 4565 | M | M.Hpyfe104ORF2730P (100% identity) | GGCC | M.Hpyfe37ORF4565P |
| 4570 | R | Hpyfe104ORF2730P (99% identity) | GGCC | Hpyfe37ORF4565P |
| 4575 | phosphatase PAP2 family protein | |||
| 4730 | catalase | |||
| 4735 | R | HpyK042ORF2340P (99% identity) | ACGT | Hpyfe37ORF4740P |
| 4740 | M | M.HpyK117ORF2350P (100% identity) | ACGT | M.Hpyfe37ORF4740P |
| 4745 | GIY-YIG nuclease family protein | |||
| 4740 | DNA cytosine methyltransferase | |||
| 4745 | R | Hpyfe104ORF2905P (100% identity) | ACNGT | Hpyfe37ORF4750P |
| 4750 | M | M.HpyV002II (99% identity) | ACNGT | M.Hpyfe37ORF4750P |
| 4755 | translational GTPase TypA | |||
| 4760 | lipopolysaccharide heptosyltransferase family | |||
| 4765 | M | M.HpyMA23IV (98% identity) | ATTAAT | M.Hpyfe37ORF4765P |
| 4770 | Hop family outer membrane protein HopJ/HopK | |||
| 5285 | group I intron-associated PD-(D/E)XK | |||
| 5290 | M | M.Hpyfe104ORF3435P (100% identity) | GCNGC | M.Hpyfe37ORF5290P |
| 5295 | translation elongation factor 4 | |||
| 5725 | AAA family ATPase | |||
| 5730 | M | M.HpyTW17ORF1330P (98% identity) | CCGG | M.Hpyfe37ORF5730P |
| 5735 | R | HpyJSHR6ORF11280P (96% identity) | CCGG | Hpyfe37ORF5730P |
| 5740 | 204 aa hypothetical protein | |||
| 5740 | 204 aa hypothetical protein | |||
| 5745 | M | M.HpyF210ORF305P (100% identity) | TCGA | M.Hpyfe37ORF5745P |
| 5750 | exodeoxyribonuclease VII large subunit | |||
| 6160 | pseudaminic acid synthase | |||
| 6165 | R | R2.Hpyfe104ORF4305P (99% identity) | R2.Hpyfe37ORF6175P | |
| 6170 | R | R1.Hpyfe104ORF4305P (100% identity) | R1.Hpyfe37ORF6175P | |
| 6175 | M | M2.Hpyfe104ORF4305P (100% identity) | M2.Hpyfe37ORF6175P | |
| ??? | M | M1.Hpyfe104ORF4305P (99% identity) | M1.Hpyfe37ORF6175P | |
| 6190 | IS1595 family transposase | |||
| 6445 | ACP S-malonyltransferase | |||
| 6455 | R | HpyKG6IXP (94% identity) | GATC | Hpyfe37ORF6460P |
| 6460 | M | M.HpyJA112X (98% identity) | GATC | M.Hpyfe37ORF6460P |
| 6465 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6875 | sodium/proline symporter PutP | |||
| 6880 | M | M2.Hpyfe95ORF845P (97% identity) | M1.Hpyfe37ORF6880P | |
| 6885 | M | M2.Hpyfe15ORF6740P (97% identity) | CCTC | M2.Hpyfe37ORF6880P |
| 6890 | agmatine deiminase | |||
| 6935 | DNA methyltransferase | |||
| 6940 | RM | Hpy72ORF45P (61% identity) | Hpyfe37ORF6940P | |
| 6945 | carboxylating nicotinate-nucleotide | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.Hpyfe114ORF40P (96% identity) | M.Hpyfe37ORF40P | |
| 45 | R | HpyK041ORF7315P (98% identity) | Hpyfe37ORF40P | |
| 50 | 708 aa hypothetical protein | |||
| 615 | type III restriction endonuclease subunit R | |||
| 620 | R | Hpyfe104ORF5605P (95% identity) | Hpyfe37ORF625P | |
| 625 | M | M.Hpyfe104ORF5605P (99% identity) | M.Hpyfe37ORF625P | |
| 630 | DNA/RNA non-specific endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2920 | type I glutamate--ammonia ligase | |||
| 2925 | R | Hpyfe68GmrSDP (92% identity) | Hpyfe37GmrSDP | |
| 2930 | 50S ribosomal protein L9 | |||
| 3500 | sel1 repeat family protein | |||
| 3505 | R | Hpyfe104GmrSD2P (99% identity) | Hpyfe37GmrSD2P | |
| 3510 | NAD(P)H-dependent oxidoreductase | |||