Helicobacter pylori Hpfe038 |
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Putative Helicobacter pylori Hpfe038 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,576,312 bp
GenBank #: CP094137
REBASE acronym: Hpyfe38
Org_num: 57293
All begin MPG13_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4405 | outer membrane beta-barrel protein HofF | |||
| 4410 | S | S.HpyBG7X (96% identity) | GAANNNNNNNTTC | S.Hpyfe38ORF4410P |
| 4415 | cadmium-translocating P-type ATPase | |||
| 4690 | hydroxyethylthiazole kinase | |||
| 4695 | R | HpyTW20ORF3705P (96% identity) | Hpyfe38ORF4705P | |
| 4700 | S | S.Hpyfe72ORF2975P (98% identity) | S.Hpyfe38ORF4705P | |
| 4705 | M | M.Hpyfe115ORF3010P (96% identity) | M.Hpyfe38ORF4705P | |
| 4710 | phosphatase PAP2 family protein | |||
| 4960 | type I restriction endonuclease | |||
| 4965 | R | Hpyfe8ORF2045P (96% identity) | CCANNNNNNTAA | Hpyfe38ORF4970P |
| 4970 | M | M.Hpyfe60ORF4945P (98% identity) | CCANNNNNNTAA | M.Hpyfe38ORF4970P |
| 4975 | S | S.Hpy102ORF2505P (98% identity) | CCANNNNNNTAA | S.Hpyfe38ORF4970P |
| 4985 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | 713 aa hypothetical protein | |||
| 55 | RM | HpyK001ORF7335P (92% identity) | Hpyfe38ORF55P | |
| 60 | transcription termination factor NusA | |||
| 265 | ComF family protein | |||
| 270 | RM | HpyOK316ORFFP (98% identity) | CYANNNNNNTTC | Hpyfe38ORF270P |
| 275 | S | S.HpyCOL121ORF7195P (95% identity) | CYANNNNNNTTC | S.Hpyfe38ORF270P |
| 280 | DNA polymerase I | |||
| 1400 | serine O-acetyltransferase | |||
| 1405 | R | HpyMA21IP (92% identity) | CATG | Hpyfe38ORF1410P |
| 1410 | M | M.HpyJ029I (98% identity) | CATG | M.Hpyfe38ORF1410P |
| 1415 | HAD family hydrolase | |||
| 1855 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1860 | M | M.HpyBS30ORF1595P (99% identity) | GCGC | M.Hpyfe38ORF1860P |
| 1865 | 144 aa hypothetical protein | |||
| 2035 | Laminin subunit alpha-2 precursor | |||
| 2040 | R | Hpyfe52ORF2065P (97% identity) | TCNNGA | Hpyfe38ORF2045P |
| 2045 | M | M.Hpyfe88ORF2055P (99% identity) | TCNNGA | M.Hpyfe38ORF2045P |
| 2050 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2680 | ATP-dependent helicase | |||
| 2685 | M | M.HpyUM023ORF8270P (98% identity) | GTNNAC | M.Hpyfe38ORF2685P |
| 2690 | R | Hpyfe28ORF2695P (97% identity) | GTNNAC | Hpyfe38ORF2685P |
| 2695 | flagellar hook protein FlgE | |||
| 2905 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2910 | M | M.Hpyfe33ORF2905P (99% identity) | GTAC | M.Hpyfe38ORF2910P |
| 2915 | R | HpyK25VIIIP (99% identity) | GTAC | Hpyfe38ORF2910P |
| 2920 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3875 | outer membrane protein | |||
| 3880 | RM | HpyBS281ORF4120P (84% identity) | Hpyfe38ORF3880P | |
| 3885 | (Fe-S)-binding protein | |||
| 4855 | catalase | |||
| ??? | M | M.HpyTW24ORF2345P (86% identity) | M.Hpyfe38ORF4860P | |
| 4865 | GIY-YIG nuclease family protein | |||
| 4860 | DNA cytosine methyltransferase | |||
| 4865 | R | Hpyfe97ORF5110P (99% identity) | ACNGT | Hpyfe38ORF4870P |
| 4870 | M | M.Hpyfe59ORF4845P (98% identity) | ACNGT | M.Hpyfe38ORF4870P |
| 4875 | translational GTPase TypA | |||
| 4880 | lipopolysaccharide heptosyltransferase family | |||
| 4885 | M | M.Hpy321ORFMP (98% identity) | ATTAAT | M.Hpyfe38ORF4885P |
| 4890 | Hop family outer membrane protein HopJ/HopK | |||
| 5825 | AAA family ATPase | |||
| 5830 | M | M.Hpyfe23ORF5955P (100% identity) | CCGG | M.Hpyfe38ORF5830P |
| 5835 | R | HpyK101VIIP (97% identity) | CCGG | Hpyfe38ORF5830P |
| 5840 | 204 aa hypothetical protein | |||
| 5840 | 204 aa hypothetical protein | |||
| 5845 | M | M.Hpyfe61ORF5990P (96% identity) | TCGA | M.Hpyfe38ORF5845P |
| 5850 | exodeoxyribonuclease VII large subunit | |||
| 6250 | pseudaminic acid synthase | |||
| 6255 | R | R2.HpyTW18ORF895P (97% identity) | R2.Hpyfe38ORF6265P | |
| 6260 | R | R1.HpyK048ORF960P (99% identity) | R1.Hpyfe38ORF6265P | |
| 6265 | M | M2.HpySG36ORF5935P (99% identity) | M2.Hpyfe38ORF6265P | |
| 6270 | M | M1.HpyK28ORF990P (99% identity) | M1.Hpyfe38ORF6265P | |
| 6275 | IS1595 family transposase | |||
| 6665 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6670 | M | M.HpyJP2ORFAP (97% identity) | GATC | M.Hpyfe38ORF6670P |
| 6675 | HTH domain-containing protein | |||
| 6865 | sodium/proline symporter PutP | |||
| 6870 | M | M1.Hpyfe101ORF6845P (82% identity) | M1.Hpyfe38ORF6870P | |
| 6875 | M | M1.HpyTW18VII (99% identity) | CCTC | M2.Hpyfe38ORF6870P |
| 6880 | agmatine deiminase | |||
| 6925 | DNA methyltransferase | |||
| 6930 | R | Hpy928ORFGP (97% identity) | GANTC | Hpyfe38ORF6935P |
| 6935 | M | M.Hpyfe40ORF6905P (99% identity) | GANTC | M.Hpyfe38ORF6935P |
| 6940 | 303 aa hypothetical protein | |||
| 6940 | 303 aa hypothetical protein | |||
| 6945 | RM | Hpyfe22ORF7040P (96% identity) | Hpyfe38ORF6945P | |
| 6950 | carboxylating nicotinate-nucleotide | |||
| 7465 | 101 aa hypothetical protein | |||
| 7470 | R | HpyK118XIP (98% identity) | TGCA | Hpyfe38ORF7475P |
| 7475 | M | M.HpyMA20VII (99% identity) | TGCA | M.Hpyfe38ORF7475P |
| 7480 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.Hpy458ORFIP (96% identity) | M.Hpyfe38ORF40P | |
| 45 | R | Hpyfe24ORF40P (98% identity) | Hpyfe38ORF40P | |
| 50 | 713 aa hypothetical protein | |||
| 625 | biotin synthase | |||
| 630 | R | Hpy1829AORF13250P (94% identity) | Hpyfe38ORF635P | |
| 635 | M | M.HpyOK301ORFEP (97% identity) | M.Hpyfe38ORF635P | |
| 640 | DNA/RNA non-specific endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2950 | type I glutamate--ammonia ligase | |||
| 2955 | R | HpyJ028GmrSDP (89% identity) | Hpyfe38GmrSD2P | |
| 2960 | 50S ribosomal protein L9 | |||
| 3540 | sel1 repeat family protein | |||
| 3545 | R | HpyCA19GmrSD2P (92% identity) | Hpyfe38GmrSDP | |
| 3550 | NAD(P)H-dependent oxidoreductase | |||