Helicobacter pylori Hpfe039 |
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Putative Helicobacter pylori Hpfe039 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,626,226 bp
GenBank #: CP094136
REBASE acronym: Hpyfe39
Org_num: 57294
All begin MPF95_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3025 | phosphatase PAP2 family protein | |||
| 3030 | M | M.HpyTW21XII (96% identity) | M.Hpyfe39ORF3030P | |
| 3035 | S | S.HpyMA16XVI (89% identity) | S.Hpyfe39ORF3030P | |
| 3040 | R | HpySG05ORF2575P (96% identity) | Hpyfe39ORF3030P | |
| 3045 | hydroxyethylthiazole kinase | |||
| 3330 | cadmium-translocating P-type ATPase | |||
| 3335 | S | S2.Hpy21ORF469P (95% identity) | CTANNNNNNNNTTG | S.Hpyfe39ORF3335P |
| 3340 | outer membrane beta-barrel protein HofF | |||
| 4975 | type I restriction endonuclease | |||
| 4980 | R | HpyJ010ORF3900P (70% identity) | CACNNNNNTAY | Hpyfe39ORF4985P |
| 4985 | M | M.HpyF233ORFNP (98% identity) | CACNNNNNTAY | M.Hpyfe39ORF4985P |
| 4990 | S | S.HpyV003ORF3705P (99% identity) | CACNNNNNTAY | S.Hpyfe39ORF4985P |
| 5000 | RNA degradosome polyphosphate kinase | |||
| 7740 | M48 family metallopeptidase | |||
| 7745 | R | HpyMA08VP (97% identity) | CRTANNNNNNNTG | Hpyfe39ORF7750P |
| 7750 | M | M.HpySG33XIII (97% identity) | CRTANNNNNNNTG | M.Hpyfe39ORF7750P |
| 7755 | S | S.HpyAR10ORF7275P (98% identity) | CRTANNNNNNNTG | S.Hpyfe39ORF7750P |
| 7760 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | type III restriction-modification system | |||
| 55 | RM | Hpy52ORF1418P (83% identity) | Hpyfe39ORF55P | |
| 60 | 174 aa hypothetical protein | |||
| 145 | outer membrane protein | |||
| 150 | R | Hpy334ORFCP (97% identity) | CCATC | Hpyfe39ORF155P |
| 155 | M | M1.Hpyfe93ORF140P (100% identity) | CCATC | M1.Hpyfe39ORF155P |
| 160 | M | M1.HpyUM111ORF3275P (99% identity) | CCATC | M2.Hpyfe39ORF155P |
| 165 | LptF/LptG family permease | |||
| 1420 | serine O-acetyltransferase | |||
| 1425 | R | Hpyfe78ORF5595P (96% identity) | CATG | Hpyfe39ORF1430P |
| 1430 | M | M.Hpyfe78ORF5595P (99% identity) | CATG | M.Hpyfe39ORF1430P |
| 1435 | HAD family hydrolase | |||
| 1605 | purine-nucleoside phosphorylase | |||
| 1610 | R | Hpyfe48ORF1580P (99% identity) | TCNGA | Hpyfe39ORF1615P |
| 1615 | M | M.HpySG12IX (99% identity) | TCNGA | M.Hpyfe39ORF1615P |
| 1620 | purine-nucleoside phosphorylase | |||
| 1890 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1895 | M | M.Hpyfe6ORF1845P (99% identity) | GCGC | M.Hpyfe39ORF1895P |
| 1900 | 144 aa hypothetical protein | |||
| 2070 | Laminin subunit alpha-2 precursor | |||
| 2075 | R | Hpyfe59ORF2060P (99% identity) | TCNNGA | Hpyfe39ORF2080P |
| 2080 | M | M.Hpyfe92ORF2245P (100% identity) | TCNNGA | M.Hpyfe39ORF2080P |
| 2085 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2750 | ATP-dependent helicase | |||
| 2755 | M | M.Hpy3ORF9860P (98% identity) | GTNNAC | M.Hpyfe39ORF2755P |
| 2760 | R | Hpyfe24ORF2855P (95% identity) | GTNNAC | Hpyfe39ORF2755P |
| 2765 | flagellar hook protein FlgE | |||
| 4765 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4770 | R | HpyK008IXP (96% identity) | GTAC | Hpyfe39ORF4775P |
| 4775 | M | M.Hpy321ORFPP (93% identity) | GTAC | M.Hpyfe39ORF4775P |
| 4780 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4865 | catalase | |||
| 4870 | R | Hpyfe6ORF4720P (100% identity) | ACGT | Hpyfe39ORF4875P |
| 4875 | M | M.Hpyfe6ORF4720P (98% identity) | ACGT | M.Hpyfe39ORF4875P |
| 4880 | GIY-YIG nuclease family protein | |||
| 4875 | DNA cytosine methyltransferase | |||
| 4880 | R | HpyU123IIP (100% identity) | ACNGT | Hpyfe39ORF4885P |
| 4885 | M | M.HpyMKM1ORF487P (99% identity) | ACNGT | M.Hpyfe39ORF4885P |
| 4890 | translational GTPase TypA | |||
| 4895 | lipopolysaccharide heptosyltransferase family | |||
| 4900 | M | M.HpyK029II (99% identity) | ATTAAT | M.Hpyfe39ORF4900P |
| 4905 | Hop family outer membrane protein HopJ/HopK | |||
| 5850 | AAA family ATPase | |||
| 5855 | M | M.Hpyfe102ORF5915P (99% identity) | CCGG | M.Hpyfe39ORF5855P |
| 5860 | R | HpyTW03VP (96% identity) | CCGG | Hpyfe39ORF5855P |
| 5865 | 204 aa hypothetical protein | |||
| 5865 | 204 aa hypothetical protein | |||
| 5870 | M | M.Hpyfe72ORF5775P (98% identity) | TCGA | M.Hpyfe39ORF5870P |
| 5875 | exodeoxyribonuclease VII large subunit | |||
| 6850 | alpha-1,2-fucosyltransferase | |||
| 6855 | M | M.HpyJ028VI (94% identity) | M.Hpyfe39ORF6855P | |
| 6860 | HTH domain-containing protein | |||
| 7015 | sodium/proline symporter PutP | |||
| 7020 | M | M.Hpyfe6ORF6715P (100% identity) | CCTTC | M.Hpyfe39ORF7020P |
| 7025 | R | HpyTW06IVP (100% identity) | CCTTC | Hpyfe39ORF7020P |
| 7030 | HNH endonuclease | |||
| 7025 | restriction endonuclease | |||
| 7030 | R | Hpyfe96ORF6885P (96% identity) | CCTC | Hpyfe39ORF7035P |
| 7035 | M | M2.HpyOK310ORFLP (99% identity) | CCTC | M1.Hpyfe39ORF7035P |
| 7040 | M | M1.Hpy66XIV (99% identity) | CCTC | M2.Hpyfe39ORF7035P |
| 7045 | agmatine deiminase | |||
| 7090 | DNA methyltransferase | |||
| 7095 | R | Hpyfe115ORF7170P (98% identity) | GANTC | Hpyfe39ORF7100P |
| 7100 | M | M.HpyV007VI (98% identity) | GANTC | M.Hpyfe39ORF7100P |
| 7105 | N-6 DNA methylase | |||
| 7160 | copper response regulator transcription factor | |||
| 7165 | R | HpySG14VIP (98% identity) | GAAGA | Hpyfe39ORF7170P |
| 7170 | M | M2.HpyID5ORF220P (99% identity) | GAAGA | M1.Hpyfe39ORF7170P |
| 7175 | M | M1.HpyK118VIII (99% identity) | GAAGA | M2.Hpyfe39ORF7170P |
| 7180 | site-specific DNA-methyltransferase | |||
| 7635 | 149 aa hypothetical protein | |||
| 7640 | R | HpySG03XVIP (98% identity) | TGCA | Hpyfe39ORF7645P |
| 7645 | M | M.Hpybs2ORFKP (96% identity) | TGCA | M.Hpyfe39ORF7645P |
| 7650 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyK032ORF685P (95% identity) | M.Hpyfe39ORF40P | |
| 50 | R | Hpyfe115ORF40P (96% identity) | Hpyfe39ORF40P | |
| 55 | class I SAM-dependent DNA methyltransferase | |||
| 650 | biotin synthase | |||
| 655 | R | HpySG17ORF1010P (95% identity) | Hpyfe39ORF660P | |
| 660 | M | M.HpyF209ORF1309P (97% identity) | M.Hpyfe39ORF660P | |
| 665 | DNA/RNA non-specific endonuclease | |||
| 7175 | site-specific DNA-methyltransferase | |||
| ??? | M | M.HpyTW17ORF195P (96% identity) | TCAG | M.Hpyfe39ORF7180P |
| 7190 | R | HpyU011ORF200P (94% identity) | TCAG | Hpyfe39ORF7180P |
| 7195 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4120 | NAD(P)H-dependent oxidoreductase | |||
| 4125 | R | HpySG24GmrSD2P (96% identity) | Hpyfe39GmrSDP | |
| 4130 | sel1 repeat family protein | |||
| 4725 | 50S ribosomal protein L9 | |||
| 4730 | R | HpyMA08GmrSDP (89% identity) | Hpyfe39GmrSD2P | |
| 4735 | type I glutamate--ammonia ligase | |||