Helicobacter pylori Hpfe040 |
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Putative Helicobacter pylori Hpfe040 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,566,721 bp
GenBank #: CP094135
REBASE acronym: Hpyfe40
Org_num: 57295
All begin MPG28_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4315 | outer membrane beta-barrel protein HofF | |||
| 4320 | S | S.HpySW34ORF2770P (67% identity) | S.Hpyfe40ORF4320P | |
| 4325 | cadmium-translocating P-type ATPase | |||
| 4605 | hydroxyethylthiazole kinase | |||
| 4610 | R | Hpyfe80ORF4595P (96% identity) | Hpyfe40ORF4620P | |
| 4615 | S | S.HpyK008ORF2545P (95% identity) | S.Hpyfe40ORF4620P | |
| 4620 | M | M.HpySG05ORF2575P (94% identity) | M.Hpyfe40ORF4620P | |
| 4625 | type I restriction endonuclease | |||
| 4880 | type I restriction endonuclease | |||
| 4885 | R | HpyJSHR31ORF9580P (69% identity) | CTTTANNNNNNTG | Hpyfe40ORF4890P |
| 4890 | M | M.Hpyfe118ORF5095P (97% identity) | CTTTANNNNNNTG | M.Hpyfe40ORF4890P |
| 4895 | S | S.HpyDU8AORFLP (98% identity) | CTTTANNNNNNTG | S.Hpyfe40ORF4890P |
| 4905 | RNA degradosome polyphosphate kinase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 55 | 713 aa hypothetical protein | |||
| 60 | RM | HpyK049ORF7285P (67% identity) | Hpyfe40ORF60P | |
| 65 | transcription termination factor NusA | |||
| 130 | outer membrane protein | |||
| 135 | R | HpyMKF8ORF1415P (97% identity) | CCATC | Hpyfe40ORF140P |
| 140 | M | M1.Hpyfe11ORF135P (99% identity) | CCATC | M1.Hpyfe40ORF140P |
| 145 | M | M2.Hpyfe78ORF140P (98% identity) | CCATC | M2.Hpyfe40ORF140P |
| 150 | LptF/LptG family permease | |||
| 280 | VRR-NUC domain-containing protein | |||
| 285 | R | HpyCOL113ORF7150P (98% identity) | Hpyfe40ORF290P | |
| 290 | M | M.HpyCOL113ORF7150P (97% identity) | M.Hpyfe40ORF290P | |
| 295 | S | S.Hpyfe49ORF275P (89% identity) | S.Hpyfe40ORF290P | |
| 300 | DNA polymerase I | |||
| 1415 | serine O-acetyltransferase | |||
| 1420 | R | Hpyfe56ORF1435P (94% identity) | CATG | Hpyfe40ORF1425P |
| 1425 | M | M.HpyK012I (98% identity) | CATG | M.Hpyfe40ORF1425P |
| 1430 | HAD family hydrolase | |||
| 1870 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1875 | M | M.HpySW10XVI (94% identity) | M.Hpyfe40ORF1875P | |
| 1880 | 144 aa hypothetical protein | |||
| 2050 | Laminin subunit alpha-2 precursor | |||
| 2055 | R | Hpyfe85ORF2060P (100% identity) | TCNNGA | Hpyfe40ORF2060P |
| 2060 | M | M.HpyCHN8VIII (99% identity) | TCNNGA | M.Hpyfe40ORF2060P |
| 2065 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2930 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 2935 | M | M.Hpyfe37ORF2880P (100% identity) | GTAC | M.Hpyfe40ORF2935P |
| 2940 | R | Hpyfe7ORF4690P (98% identity) | GTAC | Hpyfe40ORF2935P |
| 2945 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 3810 | 450 aa hypothetical protein | |||
| 3815 | RM | Hpy33CORF3520P (81% identity) | Hpyfe40ORF3815P | |
| 3820 | (Fe-S)-binding protein | |||
| 4780 | catalase | |||
| 4785 | R | HpyK009ORF2310P (98% identity) | ACGT | Hpyfe40ORF4790P |
| 4790 | M | M.Hpyfe2ORF4945P (99% identity) | ACGT | M.Hpyfe40ORF4790P |
| 4795 | translational GTPase TypA | |||
| 4800 | lipopolysaccharide heptosyltransferase family | |||
| 4805 | M | M.HpyTW18IV (98% identity) | ATTAAT | M.Hpyfe40ORF4805P |
| 4810 | Hop family outer membrane protein HopJ/HopK | |||
| 5325 | 67 aa hypothetical protein | |||
| 5330 | M | M.Hpyfe99ORF5630P (81% identity) | M.Hpyfe40ORF5330P | |
| 5335 | translation elongation factor 4 | |||
| 5760 | AAA family ATPase | |||
| 5765 | M | M.HpyML1ORFNP (98% identity) | CCGG | M.Hpyfe40ORF5765P |
| 5770 | R | HpyJ028IVP (91% identity) | CCGG | Hpyfe40ORF5765P |
| 5775 | 204 aa hypothetical protein | |||
| 5775 | 204 aa hypothetical protein | |||
| 5780 | M | M.Hpyfe70ORF5895P (99% identity) | TCGA | M.Hpyfe40ORF5780P |
| 5785 | exodeoxyribonuclease VII large subunit | |||
| 6445 | ACP S-malonyltransferase | |||
| 6455 | R | HpyK044VIIP (97% identity) | GATC | Hpyfe40ORF6460P |
| 6460 | M | M.HpyUM065ORF1900P (97% identity) | GATC | M.Hpyfe40ORF6460P |
| 6465 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6835 | sodium/proline symporter PutP | |||
| 6840 | M | M1.Hpyfe104ORF6710P (97% identity) | M1.Hpyfe40ORF6840P | |
| 6845 | M | M1.HpyTW07XVI (98% identity) | CCTC | M2.Hpyfe40ORF6840P |
| 6850 | agmatine deiminase | |||
| 6895 | DNA methyltransferase | |||
| 6900 | R | Hpy53ORFEP (97% identity) | GANTC | Hpyfe40ORF6905P |
| 6905 | M | M.HpyOK313ORFPP (100% identity) | GANTC | M.Hpyfe40ORF6905P |
| 6910 | DNA methyltransferase | |||
| 6905 | site-specific DNA-methyltransferase | |||
| ??? | RM | Hpyfe115ORF7175P (91% identity) | Hpyfe40ORF6910P | |
| 6925 | carboxylating nicotinate-nucleotide | |||
| 7440 | DUF5343 domain-containing protein | |||
| 7445 | M | M.HpyOK06ORFFP (99% identity) | M.Hpyfe40ORF7445P | |
| 7450 | type II restriction endonuclease | |||
| 7445 | DNA cytosine methyltransferase | |||
| 7450 | R | Hpy30VIP (97% identity) | TGCA | Hpyfe40ORF7455P |
| 7455 | M | M.HpyUM085ORF3635P (98% identity) | TGCA | M.Hpyfe40ORF7455P |
| 7460 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.Hpyfe57ORF40P (97% identity) | M.Hpyfe40ORF40P | |
| 50 | R | HpyT029ORF7135P (97% identity) | Hpyfe40ORF40P | |
| 55 | 713 aa hypothetical protein | |||
| 635 | biotin synthase | |||
| 640 | R | Hpyfe122ORF630P (94% identity) | Hpyfe40ORF645P | |
| 645 | M | M.Hpyfe107ORF615P (97% identity) | M.Hpyfe40ORF645P | |
| 650 | DNA/RNA non-specific endonuclease | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2975 | type I glutamate--ammonia ligase | |||
| 2980 | R | Hpyfe99GmrSDP (86% identity) | Hpyfe40GmrSDP | |
| 2985 | 50S ribosomal protein L9 | |||
| 3565 | sel1 repeat family protein | |||
| 3570 | R | Hpyfe48GmrSD2P (95% identity) | Hpyfe40GmrSD2P | |
| 3575 | NAD(P)H-dependent oxidoreductase | |||