Helicobacter pylori Hpfe048 |
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Putative Helicobacter pylori Hpfe048 RM systems
Ref: Liu,L.G. unpublished
REBASE ref # 34237
Complete sequence: 1,613,194 bp
GenBank #: CP094134
REBASE acronym: Hpyfe48
Org_num: 57296
All begin MPG50_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3255 | cadmium-translocating P-type ATPase | |||
| 3260 | S | S.Hpyfe48ORF2960P (100% identity) | ACANNNNNNRTAY | S.Hpyfe48ORF3260P |
| 3265 | outer membrane beta-barrel protein HofF | |||
| 4905 | motility associated factor glycosyltransferase | |||
| 4910 | R | HpyLIM7XIP (92% identity) | CACNNNNNTC | Hpyfe48ORF4915P |
| 4915 | M | M.HpyCHN10ORF4480P (97% identity) | CACNNNNNTC | M.Hpyfe48ORF4915P |
| 4920 | S | S.HpyLIM7XI (98% identity) | CACNNNNNTC | S.Hpyfe48ORF4915P |
| 4925 | 54 aa hypothetical protein | |||
| 7690 | M48 family metallopeptidase | |||
| 7695 | R | HpySG04VIP (97% identity) | CRTANNNNNNNTC | Hpyfe48ORF7700P |
| 7700 | M | M.Hpyfe74ORF7605P (98% identity) | CRTANNNNNNNTC | M.Hpyfe48ORF7700P |
| 7705 | S | S.HpyF232ORFGP (98% identity) | CRTANNNNNNNTC | S.Hpyfe48ORF7700P |
| 7710 | FAD-dependent thymidylate synthase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 50 | 717 aa hypothetical protein | |||
| 55 | RM | HpyF227ORFZP (91% identity) | Hpyfe48ORF55P | |
| 60 | 196 aa hypothetical protein | |||
| 285 | ComF family protein | |||
| 290 | RM | Hpyfe12ORF280P (99% identity) | CYANNNNNNTTC | Hpyfe48ORF290P |
| 295 | S | S.Hpyfe59ORF275P (49% identity) | S1.Hpyfe48ORF290P | |
| 300 | S | S2.HpyMA10ORF7050P (93% identity) | S2.Hpyfe48ORF290P | |
| 305 | DNA polymerase I | |||
| 1390 | serine O-acetyltransferase | |||
| 1395 | R | HpyPF57IP (97% identity) | CATG | Hpyfe48ORF1400P |
| 1400 | M | M.Hpyfe71ORF1405P (98% identity) | CATG | M.Hpyfe48ORF1400P |
| 1405 | HAD family hydrolase | |||
| 1570 | purine-nucleoside phosphorylase | |||
| 1575 | R | HpyTW23XIP (100% identity) | TCNGA | Hpyfe48ORF1580P |
| 1580 | M | M.Hpy38ORF1164P (100% identity) | TCNGA | M.Hpyfe48ORF1580P |
| 1585 | Hop family adhesin HopQ | |||
| 1850 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 1855 | M | M.Hpyfe51ORF1875P (99% identity) | GCGC | M.Hpyfe48ORF1855P |
| 1860 | 144 aa hypothetical protein | |||
| 2030 | Laminin subunit alpha-2 precursor | |||
| 2035 | R | Hpy72ORF1040P (99% identity) | TCNNGA | Hpyfe48ORF2040P |
| 2040 | M | M.HpyV005XII (99% identity) | TCNNGA | M.Hpyfe48ORF2040P |
| 2045 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2685 | ATP-dependent helicase | |||
| 2690 | M | M.Hpyfe82ORF2685P (98% identity) | GTNNAC | M.Hpyfe48ORF2690P |
| 2695 | R | Hpy199ORFRP (97% identity) | GTNNAC | Hpyfe48ORF2690P |
| 2700 | flagellar hook protein FlgE | |||
| 3780 | (Fe-S)-binding protein | |||
| 3785 | RM | HpyJ016ORF3390P (92% identity) | Hpyfe48ORF3785P | |
| 3790 | outer membrane protein | |||
| 4705 | peptidoglycan DD-metalloendopeptidase Csd1 | |||
| 4710 | R | HpyMA20VP (98% identity) | GTAC | Hpyfe48ORF4715P |
| 4715 | M | M.HpyV007VIII (98% identity) | GTAC | M.Hpyfe48ORF4715P |
| 4720 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
| 4810 | catalase | |||
| 4815 | R | HpyK051ORF2560P (98% identity) | ACNGT | Hpyfe48ORF4820P |
| 4820 | M | M.HpyCHN6XII (99% identity) | ACNGT | M.Hpyfe48ORF4820P |
| 4825 | translational GTPase TypA | |||
| 4830 | lipopolysaccharide heptosyltransferase family | |||
| 4835 | M | M.Hpyfe58ORF5065P (98% identity) | ATTAAT | M.Hpyfe48ORF4835P |
| 4840 | Hop family outer membrane protein HopJ/HopK | |||
| 5790 | AAA family ATPase | |||
| 5795 | M | M.Hpy4125ORFKP (100% identity) | CCGG | M.Hpyfe48ORF5795P |
| 5800 | R | HpyK043IVP (99% identity) | CCGG | Hpyfe48ORF5795P |
| 5805 | 204 aa hypothetical protein | |||
| 5805 | 204 aa hypothetical protein | |||
| 5810 | M | M.Hpyfe103ORF5955P (99% identity) | TCGA | M.Hpyfe48ORF5810P |
| 5815 | exodeoxyribonuclease VII large subunit | |||
| 6220 | pseudaminic acid synthase | |||
| 6225 | R | R2.HpyCHN8ORF920P (97% identity) | R1.Hpyfe48ORF6225P | |
| 6230 | R | R1.HpyK105ORF1060P (97% identity) | R2.Hpyfe48ORF6225P | |
| 6235 | 101 aa hypothetical protein | |||
| 6620 | alpha-(1,2)-fucosyltransferase FutC1 | |||
| 6625 | M | M.HpyK050XI (97% identity) | GATC | M.Hpyfe48ORF6625P |
| 6630 | HTH domain-containing protein | |||
| 6800 | sodium/proline symporter PutP | |||
| 6805 | M | M1.Hpyfe36ORF6790P (99% identity) | M1.Hpyfe48ORF6805P | |
| 6810 | M | M2.Hpyfe78ORF6990P (94% identity) | M2.Hpyfe48ORF6805P | |
| 6815 | relaxase/mobilization nuclease domain-containing | |||
| 7040 | DNA methyltransferase | |||
| 7045 | R | Hpybs1ORFNP (99% identity) | GANTC | Hpyfe48ORF7050P |
| 7050 | M | M.HpyAs009X (99% identity) | GANTC | M.Hpyfe48ORF7050P |
| 7055 | N-6 DNA methylase | |||
| 7050 | site-specific DNA-methyltransferase | |||
| 7055 | RM | Hpyfe77ORF7160P (85% identity) | Hpyfe48ORF7055P | |
| 7060 | carboxylating nicotinate-nucleotide | |||
| 7110 | copper response regulator transcription factor | |||
| 7115 | R | Hpyfe56ORF7265P (97% identity) | GAAGA | Hpyfe48ORF7120P |
| 7120 | M | M1.Hpyfe78ORF7125P (98% identity) | GAAGA | M1.Hpyfe48ORF7120P |
| 7125 | M | M1.HpyTW19VI (99% identity) | GAAGA | M2.Hpyfe48ORF7120P |
| 7130 | EcoRV family type II restriction endonuclease | |||
| 7130 | EcoRV family type II restriction endonuclease | |||
| 7135 | M | M.HpyK112VII (98% identity) | GATATC | M.Hpyfe48ORF7135P |
| 7140 | site-specific DNA-methyltransferase | |||
| 7600 | 103 aa hypothetical protein | |||
| 7605 | R | HpyTW16IVP (98% identity) | TGCA | Hpyfe48ORF7610P |
| 7610 | M | M.Hpyfe19ORF7540P (99% identity) | TGCA | M.Hpyfe48ORF7610P |
| 7615 | 67 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 35 | ATP-dependent DNA helicase RecG | |||
| 40 | M | M.HpyOK311ORFMP (98% identity) | GWCAY | M.Hpyfe48ORF40P |
| 45 | R | Hpyfe122ORF40P (96% identity) | GWCAY | Hpyfe48ORF40P |
| 50 | 717 aa hypothetical protein | |||
| 620 | biotin synthase | |||
| 625 | R | HpyOK310ORFCP (89% identity) | Hpyfe48ORF630P | |
| 630 | M | M.Hpyfe107ORF615P (97% identity) | M.Hpyfe48ORF630P | |
| 635 | DNA/RNA non-specific endonuclease | |||
| 7135 | Dam family site-specific | |||
| 7140 | M | M.Hpybs3ORFVP (98% identity) | M.Hpyfe48ORF7140P | |
| 7145 | R | Hpybs1ORFLP (96% identity) | Hpyfe48ORF7140P | |
| 7150 | rod shape-determining protein MreC | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4090 | NAD(P)H-dependent oxidoreductase | |||
| 4095 | R | Hpyfe52GmrSD2P (96% identity) | Hpyfe48GmrSD2P | |
| 4100 | sel1 repeat family protein | |||
| 4665 | 50S ribosomal protein L9 | |||
| 4670 | R | Hpyfe81GmrSD2P (85% identity) | Hpyfe48GmrSDP | |
| 4675 | type I glutamate--ammonia ligase | |||